Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJY entry

There is 1 chain in PDB entry 3CJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4GLY 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3CJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 23Right-handed 310
Helix 2
2
A
35 52Right-handed alpha
Helix 3
3
A
125 129Right-handed 310
Helix 4
4
A
144 146Right-handed 310
Helix 5
5
A
176 185Right-handed alpha
Helix 6
6
A
186 196Right-handed alpha
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There are 3 sheets in PDB entry 3CJY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
71 81anti-parallel
Strand 4
A
86 94anti-parallel
Strand 5
A
97 106anti-parallel
Strand 6
A
55 62anti-parallel
Strand 7
A
205 210anti-parallel
Strand 8
A
246 255anti-parallel
Strand 9
A
232 240anti-parallel
Strand 10
A
219 229anti-parallel
Strand 11
A
162 169anti-parallel
Strand 12
A
148 152anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
71 81anti-parallel
Strand 4
A
86 94anti-parallel
Strand 5
A
97 106anti-parallel
Strand 6
A
55 62anti-parallel
Strand 7
A
205 210anti-parallel
Strand 8
A
246 255anti-parallel
Strand 9
A
202 203anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
33 34anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il