Analysis of interatomic Contacts of Structural Units in PDB entry:
3CK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CK8 entry

There are 2 chains in PDB entry 3CK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 37LYS 551
B
 GLN 37LYS 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 3CK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 42Right-handed 310
Helix 2
2
A
43 57Right-handed alpha
Helix 3
3
A
78 89Right-handed alpha
Helix 4
4
A
103 110Right-handed alpha
Helix 5
5
A
116 140Right-handed alpha
Helix 6
6
A
145 171Right-handed alpha
Helix 7
7
A
189 204Right-handed alpha
Helix 8
8
A
205 207Right-handed 310
Helix 9
9
A
219 233Right-handed alpha
Helix 10
10
A
233 239Right-handed alpha
Helix 11
11
A
242 255Right-handed alpha
Helix 12
12
A
263 269Right-handed 310
Helix 13
13
A
275 280Right-handed alpha
Helix 14
14
A
298 305Right-handed alpha
Helix 15
15
A
326 331Right-handed alpha
Helix 16
16
A
336 340Right-handed 310
Helix 17
17
A
356 367Right-handed alpha
Helix 18
18
A
370 379Right-handed alpha
Helix 19
19
A
403 407Right-handed 310
Helix 20
20
A
438 452Right-handed alpha
Helix 21
21
A
456 467Right-handed alpha
Helix 22
22
A
477 490Right-handed alpha
Helix 23
23
A
494 502Right-handed alpha
Helix 24
24
A
514 518Right-handed 310
Helix 25
25
A
525 530Right-handed 310
Helix 26
26
A
534 541Right-handed alpha
Helix 27
27
B
38 42Right-handed 310
Helix 28
28
B
43 54Right-handed alpha
Helix 29
29
B
73 77Right-handed 310
Helix 30
30
B
78 89Right-handed alpha
Helix 31
31
B
103 110Right-handed alpha
Helix 32
32
B
116 140Right-handed alpha
Helix 33
33
B
145 171Right-handed alpha
Helix 34
34
B
189 204Right-handed alpha
Helix 35
35
B
205 207Right-handed 310
Helix 36
36
B
219 233Right-handed alpha
Helix 37
37
B
233 239Right-handed alpha
Helix 38
38
B
242 255Right-handed alpha
Helix 39
39
B
263 269Right-handed 310
Helix 40
40
B
275 280Right-handed alpha
Helix 41
41
B
298 305Right-handed alpha
Helix 42
42
B
326 331Right-handed alpha
Helix 43
43
B
336 340Right-handed 310
Helix 44
44
B
356 367Right-handed alpha
Helix 45
45
B
370 379Right-handed alpha
Helix 46
46
B
403 407Right-handed 310
Helix 47
47
B
438 452Right-handed alpha
Helix 48
48
B
456 467Right-handed alpha
Helix 49
49
B
477 490Right-handed alpha
Helix 50
50
B
494 502Right-handed alpha
Helix 51
51
B
514 518Right-handed 310
Helix 52
52
B
525 530Right-handed 310
Helix 53
53
B
534 541Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3CK8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
323 325anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
185 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 286first strand
Strand 2
A
433 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
409 410anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
323 325anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 175first strand
Strand 2
B
185 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 286first strand
Strand 2
B
433 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
409 410anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il