Analysis of interatomic Contacts of Structural Units in PDB entry:
3CLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CLI entry

There are 2 chains in PDB entry 3CLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 52ALA 516
B
 LEU 52ALA 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3CLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 77Right-handed alpha
Helix 2
2
A
80 93Right-handed alpha
Helix 3
3
A
121 127Right-handed 310
Helix 4
4
A
144 149Right-handed 310
Helix 5
5
A
153 157Right-handed 310
Helix 6
6
A
161 178Right-handed alpha
Helix 7
7
A
181 205Right-handed alpha
Helix 8
8
A
209 227Right-handed alpha
Helix 9
9
A
229 233Right-handed 310
Helix 10
10
A
238 252Right-handed alpha
Helix 11
11
A
253 255Right-handed 310
Helix 12
12
A
260 269Right-handed alpha
Helix 13
13
A
274 277Right-handed 310
Helix 14
14
A
278 293Right-handed alpha
Helix 15
15
A
293 303Right-handed alpha
Helix 16
16
A
306 320Right-handed alpha
Helix 17
17
A
321 341Right-handed alpha
Helix 18
18
A
341 359Right-handed alpha
Helix 19
19
A
364 370Right-handed alpha
Helix 20
20
A
371 385Right-handed alpha
Helix 21
21
A
420 425Right-handed alpha
Helix 22
22
A
442 449Right-handed alpha
Helix 23
23
A
450 453Right-handed 310
Helix 24
24
A
473 491Right-handed alpha
Helix 25
25
B
65 77Right-handed alpha
Helix 26
26
B
80 93Right-handed alpha
Helix 27
27
B
121 127Right-handed 310
Helix 28
28
B
144 149Right-handed 310
Helix 29
29
B
153 157Right-handed 310
Helix 30
30
B
161 178Right-handed alpha
Helix 31
31
B
181 205Right-handed alpha
Helix 32
32
B
209 227Right-handed alpha
Helix 33
33
B
229 233Right-handed 310
Helix 34
34
B
238 252Right-handed alpha
Helix 35
35
B
253 255Right-handed 310
Helix 36
36
B
260 269Right-handed alpha
Helix 37
37
B
274 277Right-handed 310
Helix 38
38
B
278 293Right-handed alpha
Helix 39
39
B
293 304Right-handed alpha
Helix 40
40
B
306 320Right-handed alpha
Helix 41
41
B
321 341Right-handed alpha
Helix 42
42
B
341 359Right-handed alpha
Helix 43
43
B
364 371Right-handed alpha
Helix 44
44
B
371 385Right-handed alpha
Helix 45
45
B
420 425Right-handed alpha
Helix 46
46
B
442 449Right-handed alpha
Helix 47
47
B
450 453Right-handed 310
Helix 48
48
B
473 491Right-handed alpha
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There are 6 sheets in PDB entry 3CLI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
415 419parallel
Strand 4
A
390 395anti-parallel
Strand 5
A
131 132anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
506 515anti-parallel
Strand 3
A
492 501anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 402first strand
Strand 2
A
407 410anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
407 410parallel
Strand 3
B
399 402anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
112 116anti-parallel
Strand 3
B
415 419parallel
Strand 4
B
390 395anti-parallel
Strand 5
B
131 132anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
507 515anti-parallel
Strand 3
B
492 500anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il