Analysis of interatomic Contacts of Structural Units in PDB entry:
3CLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CLM entry

There is 1 chain in PDB entry 3CLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0VAL 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3CLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
20 26Right-handed alpha
Helix 3
3
A
27 34Right-handed alpha
Helix 4
4
A
43 54Right-handed alpha
Helix 5
5
A
56 65Right-handed alpha
Helix 6
6
A
70 97Right-handed alpha
Helix 7
7
A
109 113Right-handed 310
Helix 8
8
A
115 131Right-handed alpha
Helix 9
9
A
142 155Right-handed alpha
Helix 10
10
A
166 187Right-handed alpha
Helix 11
11
A
202 210Right-handed alpha
Helix 12
12
A
211 213Right-handed 310
Helix 13
13
A
214 218Right-handed 310
Helix 14
14
A
220 239Right-handed alpha
Helix 15
15
A
239 247Right-handed alpha
Helix 16
16
A
270 276Right-handed alpha
Helix 17
17
A
286 297Right-handed alpha
Helix 18
18
A
306 320Right-handed alpha
Helix 19
19
A
323 348Right-handed alpha
Helix 20
20
A
349 351Right-handed 310
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There is 1 sheet ( A) in PDB entry 3CLM.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
40 41parallel
Strand 3
A
104 107parallel
Strand 4
A
135 140parallel
Strand 5
A
159 164parallel
Strand 6
A
196 201parallel
Strand 7
A
254 258parallel
Strand 8
A
281 285parallel
Strand 9
A
12 16parallel
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