Analysis of interatomic Contacts of Structural Units in PDB entry:
3CLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CLO entry

There are 3 chains in PDB entry 3CLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 257
B
 GLY 0LEU 257
C
 GLY 0LEU 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3CLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 14Right-handed alpha
Helix 2
2
A
23 42Right-handed alpha
Helix 3
3
A
63 67Right-handed 310
Helix 4
4
A
69 75Right-handed alpha
Helix 5
5
A
83 88Right-handed alpha
Helix 6
6
A
91 110Right-handed alpha
Helix 7
7
A
113 118Right-handed alpha
Helix 8
8
A
189 194Right-handed alpha
Helix 9
9
A
198 210Right-handed alpha
Helix 10
10
A
213 222Right-handed alpha
Helix 11
11
A
224 239Right-handed alpha
Helix 12
12
A
243 254Right-handed alpha
Helix 13
13
B
4 13Right-handed alpha
Helix 14
14
B
14 15Right-handed 310
Helix 15
15
B
16 20Right-handed 310
Helix 16
16
B
24 42Right-handed alpha
Helix 17
17
B
63 67Right-handed 310
Helix 18
18
B
69 74Right-handed alpha
Helix 19
19
B
83 88Right-handed alpha
Helix 20
20
B
91 111Right-handed alpha
Helix 21
21
B
113 118Right-handed alpha
Helix 22
22
B
189 194Right-handed alpha
Helix 23
23
B
198 211Right-handed alpha
Helix 24
24
B
213 222Right-handed alpha
Helix 25
25
B
224 239Right-handed alpha
Helix 26
26
B
243 254Right-handed alpha
Helix 27
27
C
4 14Right-handed alpha
Helix 28
28
C
15 20Right-handed 310
Helix 29
29
C
25 42Right-handed alpha
Helix 30
30
C
63 67Right-handed 310
Helix 31
31
C
69 78Right-handed alpha
Helix 32
32
C
83 88Right-handed alpha
Helix 33
33
C
91 111Right-handed alpha
Helix 34
34
C
113 118Right-handed alpha
Helix 35
35
C
189 194Right-handed alpha
Helix 36
36
C
198 211Right-handed alpha
Helix 37
37
C
213 221Right-handed alpha
Helix 38
38
C
224 240Right-handed alpha
Helix 39
39
C
243 254Right-handed alpha
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There are 3 sheets in PDB entry 3CLO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
54 59anti-parallel
Strand 3
A
44 49anti-parallel
Strand 4
A
153 162anti-parallel
Strand 5
A
135 147anti-parallel
Strand 6
A
120 129anti-parallel
Strand 7
A
175 178anti-parallel
Strand 8
A
183 186anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
54 59anti-parallel
Strand 3
B
44 49anti-parallel
Strand 4
B
153 162anti-parallel
Strand 5
B
135 147anti-parallel
Strand 6
B
120 129anti-parallel
Strand 7
B
175 178anti-parallel
Strand 8
B
183 186anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 59first strand
Strand 2
C
44 49anti-parallel
Strand 3
C
153 162anti-parallel
Strand 4
C
135 147anti-parallel
Strand 5
C
120 129anti-parallel
Strand 6
C
175 178anti-parallel
Strand 7
C
183 186anti-parallel
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