Analysis of interatomic Contacts of Structural Units in PDB entry:
3CLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CLW entry

There are 6 chains in PDB entry 3CLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 28VAL 519
B
 LYS 28VAL 519
C
 LYS 29VAL 519
D
 LYS 29VAL 519
E
 LYS 29VAL 519
F
 LYS 28VAL 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 82 helices in PDB entry 3CLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 60Right-handed alpha
Helix 2
2
A
61 74Right-handed alpha
Helix 3
3
A
130 143Right-handed alpha
Helix 4
4
A
156 160Right-handed 310
Helix 5
5
A
179 197Right-handed alpha
Helix 6
6
A
213 217Right-handed 310
Helix 7
7
A
226 245Right-handed alpha
Helix 8
8
A
257 262Right-handed 310
Helix 9
9
A
273 280Right-handed alpha
Helix 10
10
A
307 324Right-handed alpha
Helix 11
11
A
350 371Right-handed alpha
Helix 12
12
A
401 406Right-handed 310
Helix 13
13
A
413 424Right-handed alpha
Helix 14
14
A
442 447Right-handed alpha
Helix 15
15
B
52 60Right-handed alpha
Helix 16
16
B
61 74Right-handed alpha
Helix 17
17
B
130 143Right-handed alpha
Helix 18
18
B
156 160Right-handed 310
Helix 19
19
B
179 196Right-handed alpha
Helix 20
20
B
213 217Right-handed 310
Helix 21
21
B
226 245Right-handed alpha
Helix 22
22
B
257 262Right-handed 310
Helix 23
23
B
273 280Right-handed alpha
Helix 24
24
B
307 324Right-handed alpha
Helix 25
25
B
350 371Right-handed alpha
Helix 26
26
B
401 406Right-handed 310
Helix 27
27
B
413 424Right-handed alpha
Helix 28
28
B
442 447Right-handed alpha
Helix 29
29
C
52 60Right-handed alpha
Helix 30
30
C
61 74Right-handed alpha
Helix 31
31
C
130 143Right-handed alpha
Helix 32
32
C
179 196Right-handed alpha
Helix 33
33
C
213 217Right-handed 310
Helix 34
34
C
226 245Right-handed alpha
Helix 35
35
C
257 262Right-handed 310
Helix 36
36
C
273 280Right-handed alpha
Helix 37
37
C
307 324Right-handed alpha
Helix 38
38
C
350 371Right-handed alpha
Helix 39
39
C
401 406Right-handed 310
Helix 40
40
C
413 424Right-handed alpha
Helix 41
41
C
442 447Right-handed alpha
Helix 42
42
D
52 60Right-handed alpha
Helix 43
43
D
61 74Right-handed alpha
Helix 44
44
D
130 143Right-handed alpha
Helix 45
45
D
156 160Right-handed 310
Helix 46
46
D
179 197Right-handed alpha
Helix 47
47
D
213 217Right-handed 310
Helix 48
48
D
226 245Right-handed alpha
Helix 49
49
D
257 262Right-handed 310
Helix 50
50
D
273 280Right-handed alpha
Helix 51
51
D
307 324Right-handed alpha
Helix 52
52
D
350 371Right-handed alpha
Helix 53
53
D
401 406Right-handed 310
Helix 54
54
D
413 424Right-handed alpha
Helix 55
55
D
442 448Right-handed alpha
Helix 56
56
E
52 60Right-handed alpha
Helix 57
57
E
61 74Right-handed alpha
Helix 58
58
E
130 143Right-handed alpha
Helix 59
59
E
156 160Right-handed 310
Helix 60
60
E
179 196Right-handed alpha
Helix 61
61
E
226 245Right-handed alpha
Helix 62
62
E
257 262Right-handed 310
Helix 63
63
E
273 279Right-handed alpha
Helix 64
64
E
307 324Right-handed alpha
Helix 65
65
E
350 371Right-handed alpha
Helix 66
66
E
401 406Right-handed 310
Helix 67
67
E
413 424Right-handed alpha
Helix 68
68
E
442 447Right-handed alpha
Helix 69
69
F
52 60Right-handed alpha
Helix 70
70
F
61 74Right-handed alpha
Helix 71
71
F
130 143Right-handed alpha
Helix 72
72
F
156 160Right-handed 310
Helix 73
73
F
179 197Right-handed alpha
Helix 74
74
F
213 217Right-handed 310
Helix 75
75
F
226 245Right-handed alpha
Helix 76
76
F
257 262Right-handed 310
Helix 77
77
F
273 280Right-handed alpha
Helix 78
78
F
307 324Right-handed alpha
Helix 79
79
F
350 371Right-handed alpha
Helix 80
80
F
401 406Right-handed 310
Helix 81
81
F
413 424Right-handed alpha
Helix 82
82
F
442 447Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 3CLW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 503first strand
Strand 2
A
484 490anti-parallel
Strand 3
A
513 519anti-parallel
Strand 4
A
461 467anti-parallel
Strand 5
A
450 456anti-parallel
Strand 6
A
431 437anti-parallel
Strand 7
A
29 41anti-parallel
Strand 8
A
473 478parallel
Strand 9
A
507 509anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
91 94parallel
Strand 3
A
148 151parallel
Strand 4
A
201 205parallel
Strand 5
A
249 255parallel
Strand 6
A
293 299parallel
Strand 7
A
330 333parallel
Strand 8
A
376 381parallel
Strand 9
A
44 48parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
391 394parallel
Strand 3
A
409 412anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 503first strand
Strand 2
B
484 491anti-parallel
Strand 3
B
513 519anti-parallel
Strand 4
B
461 467anti-parallel
Strand 5
B
450 456anti-parallel
Strand 6
B
431 437anti-parallel
Strand 7
B
29 41anti-parallel
Strand 8
B
473 478parallel
Strand 9
B
507 509anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
91 94parallel
Strand 3
B
148 151parallel
Strand 4
B
201 205parallel
Strand 5
B
249 255parallel
Strand 6
B
293 299parallel
Strand 7
B
330 333parallel
Strand 8
B
376 381parallel
Strand 9
B
44 48parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 384first strand
Strand 2
B
391 394parallel
Strand 3
B
409 412anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
494 503first strand
Strand 2
C
484 491anti-parallel
Strand 3
C
513 519anti-parallel
Strand 4
C
461 467anti-parallel
Strand 5
C
450 456anti-parallel
Strand 6
C
431 437anti-parallel
Strand 7
C
30 41anti-parallel
Strand 8
C
473 478parallel
Strand 9
C
507 509anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 48first strand
Strand 2
C
91 94parallel
Strand 3
C
148 151parallel
Strand 4
C
201 205parallel
Strand 5
C
249 255parallel
Strand 6
C
293 299parallel
Strand 7
C
330 333parallel
Strand 8
C
376 381parallel
Strand 9
C
44 48parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
383 384first strand
Strand 2
C
391 394parallel
Strand 3
C
409 412anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
494 503first strand
Strand 2
D
484 491anti-parallel
Strand 3
D
513 519anti-parallel
Strand 4
D
461 467anti-parallel
Strand 5
D
450 456anti-parallel
Strand 6
D
431 437anti-parallel
Strand 7
D
30 41anti-parallel
Strand 8
D
473 478parallel
Strand 9
D
507 509anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 48first strand
Strand 2
D
91 94parallel
Strand 3
D
148 151parallel
Strand 4
D
201 205parallel
Strand 5
D
249 255parallel
Strand 6
D
293 299parallel
Strand 7
D
330 333parallel
Strand 8
D
376 381parallel
Strand 9
D
44 48parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
383 384first strand
Strand 2
D
391 394parallel
Strand 3
D
409 412anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
497 503first strand
Strand 2
E
484 490anti-parallel
Strand 3
E
513 519anti-parallel
Strand 4
E
461 467anti-parallel
Strand 5
E
450 456anti-parallel
Strand 6
E
431 437anti-parallel
Strand 7
E
30 41anti-parallel
Strand 8
E
473 478parallel
Strand 9
E
507 509anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 48first strand
Strand 2
E
91 94parallel
Strand 3
E
148 151parallel
Strand 4
E
201 205parallel
Strand 5
E
249 255parallel
Strand 6
E
293 299parallel
Strand 7
E
330 333parallel
Strand 8
E
376 381parallel
Strand 9
E
44 48parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
383 384first strand
Strand 2
E
391 394parallel
Strand 3
E
409 412anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
494 503first strand
Strand 2
F
484 491anti-parallel
Strand 3
F
513 519anti-parallel
Strand 4
F
461 467anti-parallel
Strand 5
F
450 456anti-parallel
Strand 6
F
431 437anti-parallel
Strand 7
F
29 41anti-parallel
Strand 8
F
473 479parallel
Strand 9
F
507 509anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 48first strand
Strand 2
F
91 94parallel
Strand 3
F
148 151parallel
Strand 4
F
201 205parallel
Strand 5
F
249 255parallel
Strand 6
F
293 299parallel
Strand 7
F
330 333parallel
Strand 8
F
376 381parallel
Strand 9
F
44 48parallel
Back to list of sheets
Back to top of page

There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
383 384first strand
Strand 2
F
391 394parallel
Strand 3
F
409 412anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il