Analysis of interatomic Contacts of Structural Units in PDB entry:
3CM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CM2 entry

There are 10 chains in PDB entry 3CM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 THR 254THR 355
A
 SER 253THR 355
B
 SER 253THR 355
C
 SER 253ARG 354
E
 THR 254THR 355
F
 SER 253THR 355
G
 THR 254THR 355
H
 THR 254THR 355
I
 THR 254THR 355
J
 THR 254THR 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3CM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
259 263Right-handed 310
Helix 2
2
D
264 271Right-handed alpha
Helix 3
3
D
280 287Right-handed alpha
Helix 4
4
D
315 324Right-handed alpha
Helix 5
5
D
327 353Right-handed alpha
Helix 6
6
A
259 263Right-handed 310
Helix 7
7
A
264 271Right-handed alpha
Helix 8
8
A
280 287Right-handed alpha
Helix 9
9
A
315 324Right-handed alpha
Helix 10
10
A
327 353Right-handed alpha
Helix 11
11
B
259 263Right-handed 310
Helix 12
12
B
264 271Right-handed alpha
Helix 13
13
B
280 287Right-handed alpha
Helix 14
14
B
315 324Right-handed alpha
Helix 15
15
B
327 335Right-handed alpha
Helix 16
16
B
335 353Right-handed alpha
Helix 17
17
C
259 263Right-handed 310
Helix 18
18
C
264 271Right-handed alpha
Helix 19
19
C
280 287Right-handed alpha
Helix 20
20
C
315 324Right-handed alpha
Helix 21
21
C
327 352Right-handed alpha
Helix 22
22
E
259 263Right-handed 310
Helix 23
23
E
264 271Right-handed alpha
Helix 24
24
E
280 287Right-handed alpha
Helix 25
25
E
315 324Right-handed alpha
Helix 26
26
E
327 355Right-handed alpha
Helix 27
27
F
259 263Right-handed 310
Helix 28
28
F
264 270Right-handed alpha
Helix 29
29
F
271 273Right-handed 310
Helix 30
30
F
280 287Right-handed alpha
Helix 31
31
F
315 324Right-handed alpha
Helix 32
32
F
327 353Right-handed alpha
Helix 33
33
G
259 263Right-handed 310
Helix 34
34
G
264 271Right-handed alpha
Helix 35
35
G
280 287Right-handed alpha
Helix 36
36
G
315 324Right-handed alpha
Helix 37
37
G
327 354Right-handed alpha
Helix 38
38
H
259 263Right-handed 310
Helix 39
39
H
264 271Right-handed alpha
Helix 40
40
H
280 287Right-handed alpha
Helix 41
41
H
315 324Right-handed alpha
Helix 42
42
H
327 353Right-handed alpha
Helix 43
43
I
259 263Right-handed 310
Helix 44
44
I
264 271Right-handed alpha
Helix 45
45
I
280 287Right-handed alpha
Helix 46
46
I
315 324Right-handed alpha
Helix 47
47
I
327 353Right-handed alpha
Helix 48
48
J
259 263Right-handed 310
Helix 49
49
J
264 271Right-handed alpha
Helix 50
50
J
280 287Right-handed alpha
Helix 51
51
J
315 324Right-handed alpha
Helix 52
52
J
327 353Right-handed alpha
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There are 10 sheets in PDB entry 3CM2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 291first strand
Strand 2
D
298 300anti-parallel
Strand 3
D
306 307anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
298 300anti-parallel
Strand 3
A
306 307anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
298 300anti-parallel
Strand 3
B
306 307anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 291first strand
Strand 2
C
298 300anti-parallel
Strand 3
C
306 307anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
289 291first strand
Strand 2
E
298 300anti-parallel
Strand 3
E
306 307anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
289 291first strand
Strand 2
F
298 300anti-parallel
Strand 3
F
306 307anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
289 291first strand
Strand 2
G
298 300anti-parallel
Strand 3
G
306 307anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
289 291first strand
Strand 2
H
298 300anti-parallel
Strand 3
H
306 307anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
289 291first strand
Strand 2
I
298 300anti-parallel
Strand 3
I
306 307anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
289 291first strand
Strand 2
J
298 300anti-parallel
Strand 3
J
306 307anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il