Analysis of interatomic Contacts of Structural Units in PDB entry:
3CM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CM8 entry

There are 2 chains in PDB entry 3CM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 257LYS 716
B
 SER 1GLN 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3CM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
302 312Right-handed alpha
Helix 2
2
A
330 349Right-handed alpha
Helix 3
3
A
363 370Right-handed alpha
Helix 4
4
A
404 415Right-handed alpha
Helix 5
5
A
439 451Right-handed alpha
Helix 6
6
A
453 476Right-handed alpha
Helix 7
7
A
533 538Right-handed 310
Helix 8
8
A
572 579Right-handed alpha
Helix 9
9
A
582 601Right-handed alpha
Helix 10
10
A
607 614Right-handed alpha
Helix 11
11
A
632 650Right-handed alpha
Helix 12
12
A
652 674Right-handed alpha
Helix 13
13
A
682 692Right-handed alpha
Helix 14
14
A
697 715Right-handed alpha
Helix 15
15
B
6 12Right-handed 310
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There are 3 sheets in PDB entry 3CM8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
496 506anti-parallel
Strand 3
A
480 491anti-parallel
Strand 4
A
359 360anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 324first strand
Strand 2
A
541 550anti-parallel
Strand 3
A
557 571anti-parallel
Strand 4
A
517 526anti-parallel
Strand 5
A
496 506anti-parallel
Strand 6
A
480 491anti-parallel
Strand 7
A
420 421anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 631first strand
Strand 2
A
619 624anti-parallel
Strand 3
B
3 4anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il