Analysis of interatomic Contacts of Structural Units in PDB entry:
3CNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CNV entry

There are 4 chains in PDB entry 3CNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 98ASN 259
B
 VAL 98ASN 259
C
 VAL 98ASN 259
D
 VAL 98ASN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3CNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 137Right-handed alpha
Helix 2
2
A
168 170Right-handed 310
Helix 3
3
A
174 181Right-handed alpha
Helix 4
4
A
184 194Right-handed alpha
Helix 5
5
A
213 217Right-handed 310
Helix 6
6
B
129 136Right-handed alpha
Helix 7
7
B
168 171Right-handed 310
Helix 8
8
B
174 181Right-handed alpha
Helix 9
9
B
184 194Right-handed alpha
Helix 10
10
B
213 217Right-handed 310
Helix 11
11
C
129 136Right-handed alpha
Helix 12
12
C
168 171Right-handed 310
Helix 13
13
C
174 181Right-handed alpha
Helix 14
14
C
184 194Right-handed alpha
Helix 15
15
C
213 217Right-handed 310
Helix 16
16
D
129 137Right-handed alpha
Helix 17
17
D
168 170Right-handed 310
Helix 18
18
D
174 181Right-handed alpha
Helix 19
19
D
184 194Right-handed alpha
Helix 20
20
D
213 217Right-handed 310
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There are 4 sheets in PDB entry 3CNV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
252 258anti-parallel
Strand 3
B
199 208anti-parallel
Strand 4
B
224 234anti-parallel
Strand 5
B
238 247anti-parallel
Strand 6
B
156 166anti-parallel
Strand 7
B
143 153anti-parallel
Strand 8
B
117 127anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 127first strand
Strand 2
A
143 152anti-parallel
Strand 3
A
157 166anti-parallel
Strand 4
A
238 247anti-parallel
Strand 5
A
224 234anti-parallel
Strand 6
A
197 208anti-parallel
Strand 7
B
252 258anti-parallel
Strand 8
B
105 107anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 107first strand
Strand 2
C
252 258anti-parallel
Strand 3
D
199 208anti-parallel
Strand 4
D
224 234anti-parallel
Strand 5
D
238 247anti-parallel
Strand 6
D
156 166anti-parallel
Strand 7
D
143 153anti-parallel
Strand 8
D
117 127anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 127first strand
Strand 2
C
143 153anti-parallel
Strand 3
C
156 166anti-parallel
Strand 4
C
238 247anti-parallel
Strand 5
C
224 234anti-parallel
Strand 6
C
199 208anti-parallel
Strand 7
D
252 258anti-parallel
Strand 8
D
105 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il