Analysis of interatomic Contacts of Structural Units in PDB entry:
3CP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CP2 entry

There is 1 chain in PDB entry 3CP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 3CP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
55 66Right-handed alpha
Helix 3
3
A
69 77Right-handed alpha
Helix 4
4
A
100 114Right-handed alpha
Helix 5
5
A
181 189Right-handed alpha
Helix 6
6
A
208 210Right-handed 310
Helix 7
7
A
232 236Right-handed 310
Helix 8
8
A
317 327Right-handed alpha
Helix 9
9
A
349 353Right-handed 310
Helix 10
10
A
369 373Right-handed 310
Helix 11
11
A
376 396Right-handed alpha
Helix 12
12
A
408 420Right-handed alpha
Helix 13
13
A
425 429Right-handed 310
Helix 14
14
A
433 439Right-handed alpha
Helix 15
15
A
443 454Right-handed alpha
Helix 16
16
A
459 483Right-handed alpha
Helix 17
17
A
491 496Right-handed alpha
Helix 18
18
A
509 514Right-handed alpha
Helix 19
19
A
519 526Right-handed alpha
Helix 20
20
A
527 530Right-handed 310
Helix 21
21
A
535 548Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3CP2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
32 35parallel
Strand 3
A
9 12parallel
Strand 4
A
150 153parallel
Strand 5
A
365 367parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
78 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
134 139anti-parallel
Strand 3
A
145 147anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
341 345anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
306 309anti-parallel
Strand 3
A
295 299anti-parallel
Strand 4
A
242 245anti-parallel
Strand 5
A
216 218anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 485first strand
Strand 2
A
507 508anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il