Analysis of interatomic Contacts of Structural Units in PDB entry:
3CP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CP8 entry

There are 4 chains in PDB entry 3CP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 619
B
 HIS 0LEU 619
C
 HIS 0LEU 619
D
 HIS 0ASP 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are101 helices in PDB entry 3CP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
64 72Right-handed alpha
Helix 5
5
A
96 109Right-handed alpha
Helix 6
6
A
178 186Right-handed alpha
Helix 7
7
A
203 205Right-handed 310
Helix 8
8
A
231 233Right-handed 310
Helix 9
9
A
245 257Right-handed alpha
Helix 10
10
A
276 282Right-handed alpha
Helix 11
11
A
314 323Right-handed alpha
Helix 12
12
A
366 368Right-handed 310
Helix 13
13
A
373 392Right-handed alpha
Helix 14
14
A
405 415Right-handed alpha
Helix 15
15
A
440 451Right-handed alpha
Helix 16
16
A
456 478Right-handed alpha
Helix 17
17
A
483 493Right-handed alpha
Helix 18
18
A
505 508Right-handed 310
Helix 19
19
A
515 521Right-handed alpha
Helix 20
20
A
523 528Right-handed alpha
Helix 21
21
A
531 534Right-handed alpha
Helix 22
22
A
536 548Right-handed alpha
Helix 23
23
A
549 565Right-handed alpha
Helix 24
24
A
585 593Right-handed alpha
Helix 25
25
A
598 603Right-handed alpha
Helix 26
26
A
609 616Right-handed alpha
Helix 27
1
B
11 23Right-handed alpha
Helix 28
2
B
34 36Right-handed 310
Helix 29
3
B
50 61Right-handed alpha
Helix 30
4
B
64 72Right-handed alpha
Helix 31
5
B
96 109Right-handed alpha
Helix 32
6
B
178 186Right-handed alpha
Helix 33
7
B
203 205Right-handed 310
Helix 34
8
B
231 233Right-handed 310
Helix 35
9
B
245 257Right-handed alpha
Helix 36
10
B
276 282Right-handed alpha
Helix 37
11
B
314 323Right-handed alpha
Helix 38
12
B
366 368Right-handed 310
Helix 39
13
B
373 392Right-handed alpha
Helix 40
14
B
405 415Right-handed alpha
Helix 41
15
B
440 451Right-handed alpha
Helix 42
16
B
456 478Right-handed alpha
Helix 43
17
B
483 493Right-handed alpha
Helix 44
18
B
505 508Right-handed 310
Helix 45
19
B
515 521Right-handed alpha
Helix 46
20
B
523 528Right-handed alpha
Helix 47
21
B
531 534Right-handed alpha
Helix 48
22
B
536 548Right-handed alpha
Helix 49
23
B
549 565Right-handed alpha
Helix 50
24
B
585 593Right-handed alpha
Helix 51
25
B
598 603Right-handed alpha
Helix 52
26
B
609 616Right-handed alpha
Helix 53
1
C
11 23Right-handed alpha
Helix 54
2
C
34 36Right-handed 310
Helix 55
3
C
50 61Right-handed alpha
Helix 56
4
C
64 72Right-handed alpha
Helix 57
5
C
96 109Right-handed alpha
Helix 58
6
C
178 186Right-handed alpha
Helix 59
7
C
203 205Right-handed 310
Helix 60
8
C
231 233Right-handed 310
Helix 61
9
C
245 257Right-handed alpha
Helix 62
10
C
276 282Right-handed alpha
Helix 63
11
C
314 323Right-handed alpha
Helix 64
12
C
366 368Right-handed 310
Helix 65
13
C
373 392Right-handed alpha
Helix 66
14
C
405 415Right-handed alpha
Helix 67
15
C
440 451Right-handed alpha
Helix 68
16
C
456 478Right-handed alpha
Helix 69
17
C
483 493Right-handed alpha
Helix 70
18
C
505 508Right-handed 310
Helix 71
19
C
515 521Right-handed alpha
Helix 72
20
C
523 528Right-handed alpha
Helix 73
21
C
531 534Right-handed alpha
Helix 74
22
C
536 548Right-handed alpha
Helix 75
23
C
549 565Right-handed alpha
Helix 76
24
C
585 593Right-handed alpha
Helix 77
25
C
598 603Right-handed alpha
Helix 78
26
C
609 616Right-handed alpha
Helix 79
1
D
11 23Right-handed alpha
Helix 80
2
D
34 36Right-handed 310
Helix 81
3
D
50 61Right-handed alpha
Helix 82
4
D
64 72Right-handed alpha
Helix 83
5
D
96 109Right-handed alpha
Helix 84
6
D
178 186Right-handed alpha
Helix 85
7
D
203 205Right-handed 310
Helix 86
8
D
231 233Right-handed 310
Helix 87
9
D
245 257Right-handed alpha
Helix 88
10
D
276 282Right-handed alpha
Helix 89
11
D
314 323Right-handed alpha
Helix 90
12
D
366 368Right-handed 310
Helix 91
13
D
373 392Right-handed alpha
Helix 92
14
D
405 415Right-handed alpha
Helix 93
15
D
440 451Right-handed alpha
Helix 94
16
D
456 478Right-handed alpha
Helix 95
17
D
483 493Right-handed alpha
Helix 96
18
D
505 508Right-handed 310
Helix 97
19
D
515 521Right-handed alpha
Helix 98
20
D
523 528Right-handed alpha
Helix 99
21
D
531 534Right-handed alpha
Helix 100
22
D
536 548Right-handed alpha
Helix 101
23
D
549 560Right-handed alpha
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There are 20 sheets in PDB entry 3CP8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 364first strand
Strand 2
A
145 148parallel
Strand 3
A
4 7parallel
Strand 4
A
27 31parallel
Strand 5
A
113 117parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
73 79anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 143first strand
Strand 2
A
129 135anti-parallel
Strand 3
A
120 126anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
157 160anti-parallel
Strand 3
A
337 344anti-parallel
Strand 4
A
190 197anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
290 295anti-parallel
Strand 4
A
302 306anti-parallel
Strand 5
A
200 202anti-parallel
Strand 6
A
332 334anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 364first strand
Strand 2
B
145 148parallel
Strand 3
B
4 7parallel
Strand 4
B
27 31parallel
Strand 5
B
113 117parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
73 79anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 143first strand
Strand 2
B
129 135anti-parallel
Strand 3
B
120 126anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
157 160anti-parallel
Strand 3
B
337 344anti-parallel
Strand 4
B
190 197anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
238 242anti-parallel
Strand 3
B
290 295anti-parallel
Strand 4
B
302 306anti-parallel
Strand 5
B
200 202anti-parallel
Strand 6
B
332 334anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
361 364first strand
Strand 2
C
145 148parallel
Strand 3
C
4 7parallel
Strand 4
C
27 31parallel
Strand 5
C
113 117parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 47first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
73 79anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 143first strand
Strand 2
C
129 135anti-parallel
Strand 3
C
120 126anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 166first strand
Strand 2
C
157 160anti-parallel
Strand 3
C
337 344anti-parallel
Strand 4
C
190 197anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 214first strand
Strand 2
C
238 242anti-parallel
Strand 3
C
290 295anti-parallel
Strand 4
C
302 306anti-parallel
Strand 5
C
200 202anti-parallel
Strand 6
C
332 334anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
361 364first strand
Strand 2
D
145 148parallel
Strand 3
D
4 7parallel
Strand 4
D
27 31parallel
Strand 5
D
113 117parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 47first strand
Strand 2
D
89 94anti-parallel
Strand 3
D
73 79anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
138 143first strand
Strand 2
D
129 135anti-parallel
Strand 3
D
120 126anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
163 166first strand
Strand 2
D
157 160anti-parallel
Strand 3
D
337 344anti-parallel
Strand 4
D
190 197anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 214first strand
Strand 2
D
238 242anti-parallel
Strand 3
D
290 295anti-parallel
Strand 4
D
302 306anti-parallel
Strand 5
D
200 202anti-parallel
Strand 6
D
332 334anti-parallel
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