Analysis of interatomic Contacts of Structural Units in PDB entry:
3CQZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3CQZ entry

There are 12 chains in PDB entry 3CQZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 6	LEU 1450
B	ASP 20	SER 1222
C	GLU 3	GLN 267
E	GLN 3	MET 215
F	LYS 72	LEU 155
H	SER 2	ARG 146
I	THR 2	SER 122
J	MET 1	PRO 65
K	ASN 2	LEU 114
L	THR 26	ARG 70
M	GLY 3	GLY 5
M	ASN 7	ASN 7

There are128 helices in PDB entry 3CQZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	95	104	Right-handed alpha
Helix 3	3	A	119	128	Right-handed alpha
Helix 4	4	A	130	143	Right-handed alpha
Helix 5	5	A	203	214	Right-handed alpha
Helix 6	6	A	215	222	Right-handed alpha
Helix 7	7	A	230	233	Right-handed 310
Helix 8	8	A	265	281	Right-handed alpha
Helix 9	9	A	285	302	Right-handed alpha
Helix 10	10	A	368	372	Right-handed alpha
Helix 11	11	A	384	395	Right-handed alpha
Helix 12	12	A	471	473	Right-handed 310
Helix 13	13	A	474	479	Right-handed alpha
Helix 14	14	A	494	505	Right-handed alpha
Helix 15	15	A	507	510	Right-handed 310
Helix 16	16	A	524	536	Right-handed alpha
Helix 17	17	A	543	553	Right-handed alpha
Helix 18	18	A	574	579	Right-handed alpha
Helix 19	19	A	580	582	Right-handed 310
Helix 20	20	A	618	623	Right-handed alpha
Helix 21	21	A	628	638	Right-handed alpha
Helix 22	22	A	638	661	Right-handed alpha
Helix 23	23	A	665	670	Right-handed 310
Helix 24	24	A	674	699	Right-handed alpha
Helix 25	25	A	709	737	Right-handed alpha
Helix 26	26	A	741	750	Right-handed alpha
Helix 27	27	A	754	763	Right-handed alpha
Helix 28	28	A	809	828	Right-handed alpha
Helix 29	29	A	834	846	Right-handed alpha
Helix 30	30	A	867	871	Right-handed 310
Helix 31	31	A	874	876	Right-handed 310
Helix 32	32	A	884	887	Right-handed 310
Helix 33	33	A	889	898	Right-handed alpha
Helix 34	34	A	909	912	Right-handed 310
Helix 35	35	A	922	947	Right-handed alpha
Helix 36	36	A	959	971	Right-handed alpha
Helix 37	37	A	982	995	Right-handed alpha
Helix 38	38	A	1004	1015	Right-handed alpha
Helix 39	39	A	1015	1026	Right-handed alpha
Helix 40	40	A	1027	1034	Right-handed alpha
Helix 41	41	A	1038	1055	Right-handed alpha
Helix 42	42	A	1063	1074	Right-handed alpha
Helix 43	43	A	1075	1078	Right-handed 310
Helix 44	44	A	1098	1107	Right-handed alpha
Helix 45	45	A	1127	1139	Right-handed alpha
Helix 46	46	A	1163	1165	Right-handed 310
Helix 47	47	A	1166	1171	Right-handed alpha
Helix 48	48	A	1198	1204	Right-handed alpha
Helix 49	49	A	1208	1218	Right-handed alpha
Helix 50	50	A	1219	1224	Right-handed 310
Helix 51	51	A	1260	1269	Right-handed alpha
Helix 52	52	A	1312	1317	Right-handed alpha
Helix 53	53	A	1331	1339	Right-handed alpha
Helix 54	54	A	1340	1359	Right-handed alpha
Helix 55	55	A	1364	1375	Right-handed alpha
Helix 56	56	A	1405	1416	Right-handed alpha
Helix 57	57	A	1423	1430	Right-handed alpha
Helix 58	58	A	1436	1439	Right-handed 310
Helix 59	59	B	29	42	Right-handed alpha
Helix 60	60	B	44	57	Right-handed alpha
Helix 61	61	B	57	65	Right-handed alpha
Helix 62	62	B	113	120	Right-handed alpha
Helix 63	63	B	179	184	Right-handed 310
Helix 64	64	B	185	192	Right-handed alpha
Helix 65	65	B	282	289	Right-handed alpha
Helix 66	66	B	293	302	Right-handed alpha
Helix 67	67	B	307	313	Right-handed alpha
Helix 68	68	B	314	321	Right-handed alpha
Helix 69	69	B	326	337	Right-handed alpha
Helix 70	70	B	344	359	Right-handed alpha
Helix 71	71	B	370	390	Right-handed alpha
Helix 72	72	B	400	402	Right-handed 310
Helix 73	73	B	408	426	Right-handed alpha
Helix 74	74	B	427	430	Right-handed 310
Helix 75	75	B	450	464	Right-handed alpha
Helix 76	76	B	487	496	Right-handed alpha
Helix 77	77	B	515	519	Right-handed 310
Helix 78	78	B	551	561	Right-handed alpha
Helix 79	79	B	570	574	Right-handed 310
Helix 80	80	B	592	605	Right-handed alpha
Helix 81	81	B	654	667	Right-handed alpha
Helix 82	82	B	680	687	Right-handed alpha
Helix 83	83	B	696	701	Right-handed 310
Helix 84	84	B	706	711	Right-handed 310
Helix 85	85	B	744	749	Right-handed 310
Helix 86	86	B	752	756	Right-handed 310
Helix 87	87	B	758	762	Right-handed 310
Helix 88	88	B	763	774	Right-handed alpha
Helix 89	89	B	784	788	Right-handed 310
Helix 90	90	B	808	813	Right-handed alpha
Helix 91	91	B	843	848	Right-handed alpha
Helix 92	92	B	995	999	Right-handed 310
Helix 93	93	B	1013	1017	Right-handed 310
Helix 94	94	B	1022	1039	Right-handed alpha
Helix 95	95	B	1051	1062	Right-handed alpha
Helix 96	96	B	1131	1141	Right-handed alpha
Helix 97	97	B	1143	1152	Right-handed alpha
Helix 98	98	B	1198	1211	Right-handed alpha
Helix 99	99	C	26	40	Right-handed alpha
Helix 100	100	C	59	70	Right-handed alpha
Helix 101	101	C	76	80	Right-handed 310
Helix 102	102	C	82	86	Right-handed 310
Helix 103	103	C	116	118	Right-handed 310
Helix 104	104	C	167	171	Right-handed 310
Helix 105	105	C	196	201	Right-handed alpha
Helix 106	106	C	204	208	Right-handed 310
Helix 107	107	C	239	265	Right-handed alpha
Helix 108	108	E	5	26	Right-handed alpha
Helix 109	109	E	31	36	Right-handed alpha
Helix 110	110	E	38	46	Right-handed alpha
Helix 111	111	E	54	59	Right-handed 310
Helix 112	112	E	67	72	Right-handed alpha
Helix 113	113	E	90	102	Right-handed alpha
Helix 114	114	E	138	141	Right-handed 310
Helix 115	115	E	143	147	Right-handed 310
Helix 116	116	E	157	168	Right-handed alpha
Helix 117	117	E	171	175	Right-handed 310
Helix 118	118	E	182	189	Right-handed alpha
Helix 119	119	F	86	102	Right-handed alpha
Helix 120	120	F	116	127	Right-handed alpha
Helix 121	121	I	61	65	Right-handed 310
Helix 122	122	J	17	27	Right-handed alpha
Helix 123	123	J	31	39	Right-handed alpha
Helix 124	124	J	43	52	Right-handed alpha
Helix 125	125	J	56	61	Right-handed alpha
Helix 126	126	K	5	10	Right-handed 310
Helix 127	127	K	39	51	Right-handed alpha
Helix 128	128	K	82	111	Right-handed alpha

There are 48 sheets in PDB entry 3CQZ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, CA, CB, CC, CD, CE, CF, EA, EB, EC, IA, IB, KA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	B	1213	1218	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	91	first strand
Strand 2	A	235	241	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	198	202	anti-parallel

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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	486	490	anti-parallel
Strand 3	A	441	445	anti-parallel
Strand 4	A	455	463	anti-parallel
Strand 5	A	363	367	parallel
Strand 6	A	468	470	anti-parallel
Strand 7	A	348	355	parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	402	406	anti-parallel
Strand 4	A	412	414	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 10 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	567	first strand
Strand 2	H	95	98	anti-parallel
Strand 3	H	141	145	anti-parallel
Strand 4	H	54	60	anti-parallel
Strand 5	H	6	16	anti-parallel
Strand 6	H	23	29	anti-parallel
Strand 7	H	37	43	anti-parallel
Strand 8	H	121	124	anti-parallel
Strand 9	H	115	118	anti-parallel
Strand 10	H	100	103	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	605	608	anti-parallel
Strand 3	A	611	614	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	882	first strand
Strand 2	A	953	957	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1281	1287	first strand
Strand 2	A	1303	1309	anti-parallel
Strand 3	A	1116	1118	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1141	1142	first strand
Strand 2	A	1272	1274	anti-parallel

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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1225	1228	first strand
Strand 2	A	1236	1241	anti-parallel
Strand 3	A	1191	1197	anti-parallel
Strand 4	A	1147	1154	anti-parallel
Strand 5	I	42	47	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1441	1445	first strand
Strand 2	F	132	137	anti-parallel
Strand 3	F	143	147	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	97	first strand
Strand 2	B	125	133	anti-parallel
Strand 3	B	166	171	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	110	111	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	212	anti-parallel
Strand 3	B	480	482	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	497	499	parallel
Strand 4	B	536	538	anti-parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	268	272	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	641	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	651	first strand
Strand 2	B	633	641	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	694	first strand
Strand 2	B	633	641	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	704	first strand
Strand 2	B	740	741	parallel
Strand 3	B	633	641	anti-parallel
Strand 4	B	650	651	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	704	first strand
Strand 2	B	740	741	parallel
Strand 3	B	633	641	anti-parallel
Strand 4	B	690	694	anti-parallel

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There are 5 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	565	first strand
Strand 2	B	585	590	anti-parallel
Strand 3	B	578	582	anti-parallel
Strand 4	B	623	627	parallel
Strand 5	B	614	618	anti-parallel

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There are 6 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	946	956	anti-parallel
Strand 5	L	56	58	anti-parallel
Strand 6	L	29	31	anti-parallel

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There are 5 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	946	956	anti-parallel
Strand 5	B	904	906	anti-parallel

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There are 2 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 8 strands in BO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	827	first strand
Strand 2	B	1085	1094	anti-parallel
Strand 3	B	1069	1070	anti-parallel
Strand 4	B	838	842	first strand
Strand 5	B	987	994	parallel
Strand 6	B	979	981	anti-parallel
Strand 7	B	1010	1012	anti-parallel
Strand 8	B	821	827	anti-parallel

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There are 3 strands in BP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	873	874	first strand
Strand 2	B	914	916	anti-parallel
Strand 3	B	935	936	anti-parallel

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There are 2 strands in BQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	910	912	first strand
Strand 2	B	939	940	anti-parallel

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There are 2 strands in BR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1158	1163	first strand
Strand 2	B	1192	1197	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	17	23	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	17	23	parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	227	234	anti-parallel
Strand 3	C	17	23	anti-parallel
Strand 4	C	12	13	parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	227	234	anti-parallel
Strand 3	C	17	23	anti-parallel
Strand 4	C	7	8	anti-parallel

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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	96	104	anti-parallel
Strand 3	C	152	162	anti-parallel
Strand 4	C	43	54	anti-parallel
Strand 5	L	65	67	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	143	147	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	78	82	anti-parallel
Strand 3	E	107	112	parallel
Strand 4	E	131	136	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	115	116	parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	155	first strand
Strand 2	E	195	202	anti-parallel
Strand 3	E	206	214	anti-parallel
Strand 4	E	177	178	parallel

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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	19	first strand
Strand 2	I	24	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	83	87	anti-parallel
Strand 3	I	99	103	anti-parallel
Strand 4	I	109	111	anti-parallel

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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	22	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3CQZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3CQZ