Analysis of interatomic Contacts of Structural Units in PDB entry:
3CVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CVG entry

There are 4 chains in PDB entry 3CVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 24ARG 303
B
 GLU 24ARG 303
C
 ILE 97ARG 303
D
 VAL 26ARG 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 3CVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 50Right-handed alpha
Helix 2
2
A
51 66Right-handed alpha
Helix 3
3
A
80 90Right-handed alpha
Helix 4
4
A
100 110Right-handed alpha
Helix 5
5
A
142 157Right-handed alpha
Helix 6
6
A
172 185Right-handed alpha
Helix 7
7
A
204 215Right-handed alpha
Helix 8
8
A
223 227Right-handed alpha
Helix 9
9
A
230 235Right-handed alpha
Helix 10
10
A
265 278Right-handed alpha
Helix 11
11
A
281 288Right-handed alpha
Helix 12
12
B
45 50Right-handed alpha
Helix 13
13
B
51 67Right-handed alpha
Helix 14
14
B
80 90Right-handed alpha
Helix 15
15
B
100 110Right-handed alpha
Helix 16
16
B
142 157Right-handed alpha
Helix 17
17
B
172 185Right-handed alpha
Helix 18
18
B
204 215Right-handed alpha
Helix 19
19
B
223 227Right-handed alpha
Helix 20
20
B
230 235Right-handed alpha
Helix 21
21
B
265 278Right-handed alpha
Helix 22
22
B
281 287Right-handed alpha
Helix 23
23
C
100 110Right-handed alpha
Helix 24
24
C
142 157Right-handed alpha
Helix 25
25
C
172 184Right-handed alpha
Helix 26
26
C
204 215Right-handed alpha
Helix 27
27
C
223 227Right-handed alpha
Helix 28
28
C
230 235Right-handed alpha
Helix 29
29
C
267 277Right-handed alpha
Helix 30
30
C
281 289Right-handed alpha
Helix 31
31
D
45 51Right-handed alpha
Helix 32
32
D
51 66Right-handed alpha
Helix 33
33
D
80 90Right-handed alpha
Helix 34
34
D
100 110Right-handed alpha
Helix 35
35
D
142 157Right-handed alpha
Helix 36
36
D
172 184Right-handed alpha
Helix 37
37
D
204 216Right-handed alpha
Helix 38
38
D
223 228Right-handed alpha
Helix 39
39
D
230 235Right-handed alpha
Helix 40
40
D
265 278Right-handed alpha
Helix 41
41
D
281 287Right-handed alpha
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There are 12 sheets in PDB entry 3CVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
73 78anti-parallel
Strand 3
A
38 44parallel
Strand 4
A
95 98parallel
Strand 5
A
252 259anti-parallel
Strand 6
A
118 129anti-parallel
Strand 7
A
238 242anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
165 167parallel
Strand 3
A
218 222parallel
Strand 4
A
118 129anti-parallel
Strand 5
A
298 299anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
294 295anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
73 78anti-parallel
Strand 3
B
38 44parallel
Strand 4
B
95 98parallel
Strand 5
B
252 259anti-parallel
Strand 6
B
118 129anti-parallel
Strand 7
B
238 242anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
165 167parallel
Strand 3
B
218 222parallel
Strand 4
B
118 129anti-parallel
Strand 5
B
298 299anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
294 295anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 200first strand
Strand 2
C
165 167parallel
Strand 3
C
218 222parallel
Strand 4
C
114 129anti-parallel
Strand 5
C
252 259anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 242first strand
Strand 2
C
114 129anti-parallel
Strand 3
C
298 299anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
290 291first strand
Strand 2
C
294 295anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 78first strand
Strand 2
D
38 44parallel
Strand 3
D
95 98parallel
Strand 4
D
252 259anti-parallel
Strand 5
D
118 129anti-parallel
Strand 6
D
238 242anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 200first strand
Strand 2
D
165 167parallel
Strand 3
D
218 222parallel
Strand 4
D
118 129anti-parallel
Strand 5
D
298 299anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
290 291first strand
Strand 2
D
294 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il