Analysis of interatomic Contacts of Structural Units in PDB entry:
3CVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CVV entry

There are 4 chains in PDB entry 3CVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 G 7
C
 G 10 T 15
D
 T 1 G 15
A
 GLU -13ARG 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3CVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-13 2Right-handed alpha
Helix 2
2
A
3 5Right-handed 310
Helix 3
3
A
21 34Right-handed alpha
Helix 4
4
A
49 54Right-handed alpha
Helix 5
5
A
57 77Right-handed alpha
Helix 6
6
A
88 100Right-handed alpha
Helix 7
7
A
112 129Right-handed alpha
Helix 8
8
A
143 151Right-handed alpha
Helix 9
9
A
158 167Right-handed alpha
Helix 10
10
A
190 196Right-handed alpha
Helix 11
11
A
204 209Right-handed alpha
Helix 12
12
A
211 215Right-handed 310
Helix 13
13
A
223 235Right-handed alpha
Helix 14
14
A
237 244Right-handed alpha
Helix 15
15
A
245 249Right-handed 310
Helix 16
16
A
261 267Right-handed alpha
Helix 17
17
A
271 286Right-handed alpha
Helix 18
18
A
295 311Right-handed alpha
Helix 19
19
A
333 342Right-handed alpha
Helix 20
20
A
347 361Right-handed alpha
Helix 21
21
A
364 376Right-handed alpha
Helix 22
22
A
383 395Right-handed alpha
Helix 23
23
A
399 411Right-handed alpha
Helix 24
24
A
427 432Right-handed 310
Helix 25
25
A
436 443Right-handed alpha
Helix 26
26
A
444 447Right-handed 310
Helix 27
27
A
450 455Right-handed alpha
Helix 28
28
A
456 460Right-handed 310
Helix 29
29
A
461 468Right-handed alpha
Helix 30
30
A
482 505Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3CVV.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
38 46parallel
Strand 3
A
6 12parallel
Strand 4
A
102 108parallel
Strand 5
A
132 136parallel
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