Analysis of interatomic Contacts of Structural Units in PDB entry:
3CVZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3CVZ entry

There are 4 chains in PDB entry 3CVZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ASN 249
B	TYR 8	ASN 249
C	GLN 6	ASN 249
D	TYR 8	ASN 249

There are 20 helices in PDB entry 3CVZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	28	Right-handed alpha
Helix 2	2	A	53	74	Right-handed alpha
Helix 3	3	A	90	92	Right-handed 310
Helix 4	4	A	96	109	Right-handed alpha
Helix 5	5	A	146	149	Right-handed alpha
Helix 6	6	B	14	28	Right-handed alpha
Helix 7	7	B	53	74	Right-handed alpha
Helix 8	8	B	90	92	Right-handed 310
Helix 9	9	B	96	109	Right-handed alpha
Helix 10	10	B	146	149	Right-handed alpha
Helix 11	11	C	14	28	Right-handed alpha
Helix 12	12	C	53	74	Right-handed alpha
Helix 13	13	C	90	92	Right-handed 310
Helix 14	14	C	96	109	Right-handed alpha
Helix 15	15	C	146	149	Right-handed alpha
Helix 16	16	D	14	28	Right-handed alpha
Helix 17	17	D	53	74	Right-handed alpha
Helix 18	18	D	90	92	Right-handed 310
Helix 19	19	D	96	109	Right-handed alpha
Helix 20	20	D	146	149	Right-handed alpha

There are 24 sheets in PDB entry 3CVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	240	248	parallel
Strand 3	A	80	88	anti-parallel
Strand 4	A	31	38	anti-parallel
Strand 5	A	41	46	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	144	145	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	176	178	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	166	170	anti-parallel
Strand 3	A	197	198	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	A	223	226	parallel
Strand 3	A	213	216	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	231	233	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	31	38	anti-parallel
Strand 3	B	80	88	anti-parallel
Strand 4	B	240	248	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	144	145	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	176	178	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	166	170	anti-parallel
Strand 3	B	197	198	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	223	226	parallel
Strand 3	B	213	216	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	231	233	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	240	248	parallel
Strand 3	C	80	88	anti-parallel
Strand 4	C	31	38	anti-parallel
Strand 5	C	41	46	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	144	145	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	176	178	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	154	first strand
Strand 2	C	166	170	anti-parallel
Strand 3	C	197	198	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	190	first strand
Strand 2	C	223	226	parallel
Strand 3	C	213	216	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	231	233	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	31	38	anti-parallel
Strand 3	D	80	88	anti-parallel
Strand 4	D	240	248	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	144	145	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	127	first strand
Strand 2	D	176	178	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	166	170	anti-parallel
Strand 3	D	197	198	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	223	226	parallel
Strand 3	D	213	216	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	231	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3CVZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3CVZ