Analysis of interatomic Contacts of Structural Units in PDB entry:
3CYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CYJ entry

There are 4 chains in PDB entry 3CYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ALA 362
B
 PRO 4ALA 362
C
 PRO 4ALA 362
D
 PRO 4ALA 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 3CYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 64Right-handed alpha
Helix 2
2
A
64 69Right-handed alpha
Helix 3
3
A
75 87Right-handed alpha
Helix 4
4
A
94 115Right-handed alpha
Helix 5
5
A
118 123Right-handed alpha
Helix 6
6
A
142 156Right-handed alpha
Helix 7
7
A
168 170Right-handed 310
Helix 8
8
A
171 184Right-handed alpha
Helix 9
9
A
198 214Right-handed alpha
Helix 10
10
A
226 237Right-handed alpha
Helix 11
11
A
251 260Right-handed alpha
Helix 12
12
A
273 279Right-handed alpha
Helix 13
13
A
280 289Right-handed alpha
Helix 14
14
A
297 305Right-handed alpha
Helix 15
15
A
306 308Right-handed 310
Helix 16
16
A
318 327Right-handed alpha
Helix 17
17
A
334 336Right-handed 310
Helix 18
18
A
353 361Right-handed alpha
Helix 19
19
B
54 64Right-handed alpha
Helix 20
20
B
64 69Right-handed alpha
Helix 21
21
B
75 87Right-handed alpha
Helix 22
22
B
94 116Right-handed alpha
Helix 23
23
B
118 123Right-handed alpha
Helix 24
24
B
142 156Right-handed alpha
Helix 25
25
B
168 170Right-handed 310
Helix 26
26
B
171 184Right-handed alpha
Helix 27
27
B
198 214Right-handed alpha
Helix 28
28
B
226 237Right-handed alpha
Helix 29
29
B
251 259Right-handed alpha
Helix 30
30
B
273 279Right-handed alpha
Helix 31
31
B
280 289Right-handed alpha
Helix 32
32
B
297 305Right-handed alpha
Helix 33
33
B
306 308Right-handed 310
Helix 34
34
B
318 327Right-handed alpha
Helix 35
35
B
353 359Right-handed alpha
Helix 36
36
C
54 64Right-handed alpha
Helix 37
37
C
64 69Right-handed alpha
Helix 38
38
C
75 87Right-handed alpha
Helix 39
39
C
94 115Right-handed alpha
Helix 40
40
C
118 123Right-handed alpha
Helix 41
41
C
142 156Right-handed alpha
Helix 42
42
C
168 170Right-handed 310
Helix 43
43
C
171 184Right-handed alpha
Helix 44
44
C
198 214Right-handed alpha
Helix 45
45
C
226 237Right-handed alpha
Helix 46
46
C
251 260Right-handed alpha
Helix 47
47
C
273 279Right-handed alpha
Helix 48
48
C
280 288Right-handed alpha
Helix 49
49
C
297 305Right-handed alpha
Helix 50
50
C
306 308Right-handed 310
Helix 51
51
C
318 327Right-handed alpha
Helix 52
52
C
353 361Right-handed alpha
Helix 53
53
D
54 64Right-handed alpha
Helix 54
54
D
64 69Right-handed alpha
Helix 55
55
D
75 87Right-handed alpha
Helix 56
56
D
94 116Right-handed alpha
Helix 57
57
D
118 123Right-handed 310
Helix 58
58
D
142 156Right-handed alpha
Helix 59
59
D
171 184Right-handed alpha
Helix 60
60
D
198 214Right-handed alpha
Helix 61
61
D
226 237Right-handed alpha
Helix 62
62
D
251 260Right-handed alpha
Helix 63
63
D
273 288Right-handed alpha
Helix 64
64
D
297 305Right-handed alpha
Helix 65
65
D
306 308Right-handed 310
Helix 66
66
D
318 327Right-handed alpha
Helix 67
67
D
353 361Right-handed alpha
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There are 12 sheets in PDB entry 3CYJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 24first strand
Strand 2
A
27 41anti-parallel
Strand 3
A
44 51anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
130 135anti-parallel
Strand 3
A
311 317parallel
Strand 4
A
292 294parallel
Strand 5
A
264 267parallel
Strand 6
A
242 245parallel
Strand 7
A
217 219parallel
Strand 8
A
188 192parallel
Strand 9
A
160 164parallel
Strand 10
A
130 135parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
351 352anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 23first strand
Strand 2
B
28 41anti-parallel
Strand 3
B
44 51anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
130 135anti-parallel
Strand 3
B
311 317parallel
Strand 4
B
292 294parallel
Strand 5
B
264 267parallel
Strand 6
B
242 245parallel
Strand 7
B
217 219parallel
Strand 8
B
188 192parallel
Strand 9
B
160 164parallel
Strand 10
B
130 135parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 329first strand
Strand 2
B
351 352anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 24first strand
Strand 2
C
27 41anti-parallel
Strand 3
C
44 51anti-parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
338 339first strand
Strand 2
C
130 135anti-parallel
Strand 3
C
311 317parallel
Strand 4
C
292 294parallel
Strand 5
C
264 267parallel
Strand 6
C
242 245parallel
Strand 7
C
217 219parallel
Strand 8
C
188 192parallel
Strand 9
C
160 164parallel
Strand 10
C
130 135parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 329first strand
Strand 2
C
351 352anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 24first strand
Strand 2
D
27 41anti-parallel
Strand 3
D
44 51anti-parallel
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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
338 339first strand
Strand 2
D
130 135anti-parallel
Strand 3
D
311 317parallel
Strand 4
D
292 294parallel
Strand 5
D
264 267parallel
Strand 6
D
242 245parallel
Strand 7
D
217 219parallel
Strand 8
D
188 192parallel
Strand 9
D
160 164parallel
Strand 10
D
130 135parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
328 329first strand
Strand 2
D
351 352anti-parallel
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