Analysis of interatomic Contacts of Structural Units in PDB entry:
3D03


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D03 entry

There are 6 chains in PDB entry 3D03 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 274
B
 MET 1THR 271
C
 MET 1THR 271
D
 MET 1THR 271
E
 MET 1THR 271
F
 MET 1ARG 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3D03. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed 310
Helix 2
2
A
23 37Right-handed alpha
Helix 3
3
A
56 68Right-handed alpha
Helix 4
4
A
83 92Right-handed alpha
Helix 5
5
A
93 99Right-handed 310
Helix 6
6
A
101 105Right-handed 310
Helix 7
7
A
132 147Right-handed alpha
Helix 8
8
A
167 171Right-handed 310
Helix 9
9
A
175 185Right-handed alpha
Helix 10
10
A
264 269Right-handed alpha
Helix 11
11
B
17 21Right-handed 310
Helix 12
12
B
23 37Right-handed alpha
Helix 13
13
B
56 68Right-handed alpha
Helix 14
14
B
83 92Right-handed alpha
Helix 15
15
B
93 99Right-handed 310
Helix 16
16
B
101 104Right-handed 310
Helix 17
17
B
132 147Right-handed alpha
Helix 18
18
B
167 171Right-handed 310
Helix 19
19
B
175 185Right-handed alpha
Helix 20
20
B
264 269Right-handed alpha
Helix 21
21
C
17 21Right-handed 310
Helix 22
22
C
23 38Right-handed alpha
Helix 23
23
C
56 68Right-handed alpha
Helix 24
24
C
83 92Right-handed alpha
Helix 25
25
C
93 99Right-handed 310
Helix 26
26
C
132 147Right-handed alpha
Helix 27
27
C
167 171Right-handed 310
Helix 28
28
C
175 185Right-handed alpha
Helix 29
29
C
264 269Right-handed alpha
Helix 30
30
D
17 21Right-handed 310
Helix 31
31
D
23 37Right-handed alpha
Helix 32
32
D
56 69Right-handed alpha
Helix 33
33
D
83 92Right-handed alpha
Helix 34
34
D
93 99Right-handed 310
Helix 35
35
D
132 147Right-handed alpha
Helix 36
36
D
167 171Right-handed 310
Helix 37
37
D
175 185Right-handed alpha
Helix 38
38
D
264 269Right-handed alpha
Helix 39
39
E
17 21Right-handed 310
Helix 40
40
E
23 37Right-handed alpha
Helix 41
41
E
56 68Right-handed alpha
Helix 42
42
E
83 92Right-handed alpha
Helix 43
43
E
93 99Right-handed 310
Helix 44
44
E
132 147Right-handed alpha
Helix 45
45
E
167 171Right-handed 310
Helix 46
46
E
175 185Right-handed alpha
Helix 47
47
E
264 269Right-handed alpha
Helix 48
48
F
17 21Right-handed 310
Helix 49
49
F
23 37Right-handed alpha
Helix 50
50
F
56 68Right-handed alpha
Helix 51
51
F
83 92Right-handed alpha
Helix 52
52
F
93 99Right-handed 310
Helix 53
53
F
101 105Right-handed 310
Helix 54
54
F
132 147Right-handed alpha
Helix 55
55
F
167 171Right-handed 310
Helix 56
56
F
175 185Right-handed alpha
Helix 57
57
F
264 269Right-handed alpha
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There are 12 sheets in PDB entry 3D03. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
44 48parallel
Strand 3
A
2 6parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
246 253anti-parallel
Strand 6
B
200 204anti-parallel
Strand 7
B
207 211anti-parallel
Strand 8
B
188 193parallel
Strand 9
B
151 155parallel
Strand 10
B
115 119parallel
Strand 11
B
106 109anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
115 118anti-parallel
Strand 3
A
151 155parallel
Strand 4
A
188 193parallel
Strand 5
A
207 211parallel
Strand 6
A
200 204anti-parallel
Strand 7
B
246 253anti-parallel
Strand 8
B
236 243anti-parallel
Strand 9
B
2 6anti-parallel
Strand 10
B
44 48parallel
Strand 11
B
74 77parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
B
261 262anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
B
229 230anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 77first strand
Strand 2
C
44 48parallel
Strand 3
C
2 6parallel
Strand 4
C
236 243anti-parallel
Strand 5
C
246 253anti-parallel
Strand 6
D
200 204anti-parallel
Strand 7
D
207 211anti-parallel
Strand 8
D
188 193parallel
Strand 9
D
151 155parallel
Strand 10
D
115 118parallel
Strand 11
D
107 109anti-parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 109first strand
Strand 2
C
115 118anti-parallel
Strand 3
C
151 155parallel
Strand 4
C
188 193parallel
Strand 5
C
207 211parallel
Strand 6
C
200 204anti-parallel
Strand 7
D
246 253anti-parallel
Strand 8
D
236 243anti-parallel
Strand 9
D
2 6anti-parallel
Strand 10
D
44 48parallel
Strand 11
D
74 77parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
D
261 262anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 262first strand
Strand 2
D
229 230anti-parallel
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There are 11 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
74 77first strand
Strand 2
E
44 48parallel
Strand 3
E
2 6parallel
Strand 4
E
236 243anti-parallel
Strand 5
E
246 253anti-parallel
Strand 6
F
200 204anti-parallel
Strand 7
F
207 211anti-parallel
Strand 8
F
188 193parallel
Strand 9
F
151 155parallel
Strand 10
F
115 118parallel
Strand 11
F
107 109anti-parallel
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There are 11 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 109first strand
Strand 2
E
115 118anti-parallel
Strand 3
E
151 155parallel
Strand 4
E
188 193parallel
Strand 5
E
207 211parallel
Strand 6
E
200 204anti-parallel
Strand 7
F
246 253anti-parallel
Strand 8
F
236 243anti-parallel
Strand 9
F
2 6anti-parallel
Strand 10
F
44 48parallel
Strand 11
F
74 77parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
229 230first strand
Strand 2
F
261 262anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
261 262first strand
Strand 2
F
229 230anti-parallel
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