Analysis of interatomic Contacts of Structural Units in PDB entry:
3D0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D0A entry

There are 8 chains in PDB entry 3D0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 C 1 G 12
F
 G 2 G 12
G
 C 1 G 12
H
 C 1 G 12
A
 SER 96LYS 291
B
 SER 95LYS 291
C
 SER 96ASN 288
D
 SER 95ASN 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3D0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
165 169Right-handed 310
Helix 2
2
A
176 182Right-handed alpha
Helix 3
3
A
277 288Right-handed alpha
Helix 4
4
B
165 169Right-handed 310
Helix 5
5
B
176 181Right-handed alpha
Helix 6
6
B
277 289Right-handed alpha
Helix 7
7
C
165 169Right-handed 310
Helix 8
8
C
178 182Right-handed 310
Helix 9
9
C
277 288Right-handed alpha
Helix 10
10
D
165 169Right-handed 310
Helix 11
11
D
176 181Right-handed alpha
Helix 12
12
D
277 287Right-handed alpha
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There are 8 sheets in PDB entry 3D0A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
230 236anti-parallel
Strand 4
A
195 198anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
264 274parallel
Strand 4
A
251 258anti-parallel
Strand 5
A
156 163anti-parallel
Strand 6
A
214 219anti-parallel
Strand 7
A
204 207anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
141 146anti-parallel
Strand 3
B
230 236anti-parallel
Strand 4
B
195 198anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
132 135anti-parallel
Strand 3
B
264 274parallel
Strand 4
B
251 258anti-parallel
Strand 5
B
156 163anti-parallel
Strand 6
B
214 219anti-parallel
Strand 7
B
204 207anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 112first strand
Strand 2
C
141 146anti-parallel
Strand 3
C
230 236anti-parallel
Strand 4
C
195 197anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 127first strand
Strand 2
C
132 135anti-parallel
Strand 3
C
264 274parallel
Strand 4
C
251 258anti-parallel
Strand 5
C
156 163anti-parallel
Strand 6
C
214 219anti-parallel
Strand 7
C
204 207anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 112first strand
Strand 2
D
141 146anti-parallel
Strand 3
D
230 236anti-parallel
Strand 4
D
195 198anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 127first strand
Strand 2
D
132 135anti-parallel
Strand 3
D
264 274parallel
Strand 4
D
251 258anti-parallel
Strand 5
D
156 163anti-parallel
Strand 6
D
214 219anti-parallel
Strand 7
D
204 207anti-parallel
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