Analysis of interatomic Contacts of Structural Units in PDB entry:
3D0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D0C entry

There are 2 chains in PDB entry 3D0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLU 302
B
 ASP 2GLN 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3D0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
9 11Right-handed 310
Helix 3
3
A
29 43Right-handed alpha
Helix 4
4
A
52 60Right-handed 310
Helix 5
5
A
61 77Right-handed alpha
Helix 6
6
A
89 103Right-handed alpha
Helix 7
7
A
119 134Right-handed alpha
Helix 8
8
A
149 156Right-handed alpha
Helix 9
9
A
170 181Right-handed alpha
Helix 10
10
A
182 186Right-handed 310
Helix 11
11
A
193 205Right-handed alpha
Helix 12
12
A
212 216Right-handed 310
Helix 13
13
A
217 231Right-handed alpha
Helix 14
14
A
232 256Right-handed alpha
Helix 15
15
A
257 269Right-handed alpha
Helix 16
16
A
284 302Right-handed alpha
Helix 17
17
B
2 7Right-handed alpha
Helix 18
18
B
8 11Right-handed 310
Helix 19
19
B
29 43Right-handed alpha
Helix 20
20
B
52 60Right-handed 310
Helix 21
21
B
61 77Right-handed alpha
Helix 22
22
B
89 103Right-handed alpha
Helix 23
23
B
119 134Right-handed alpha
Helix 24
24
B
149 156Right-handed alpha
Helix 25
25
B
170 181Right-handed alpha
Helix 26
26
B
182 186Right-handed 310
Helix 27
27
B
193 205Right-handed alpha
Helix 28
28
B
212 216Right-handed 310
Helix 29
29
B
217 231Right-handed alpha
Helix 30
30
B
232 256Right-handed alpha
Helix 31
31
B
257 269Right-handed alpha
Helix 32
32
B
284 301Right-handed alpha
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There are 2 sheets in PDB entry 3D0C. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
47 48parallel
Strand 3
A
81 86parallel
Strand 4
A
107 110parallel
Strand 5
A
138 142parallel
Strand 6
A
161 166parallel
Strand 7
A
188 191parallel
Strand 8
A
208 211parallel
Strand 9
A
13 15parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
47 48parallel
Strand 3
B
81 86parallel
Strand 4
B
107 110parallel
Strand 5
B
138 142parallel
Strand 6
B
161 166parallel
Strand 7
B
188 191parallel
Strand 8
B
208 211parallel
Strand 9
B
13 15parallel
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