Analysis of interatomic Contacts of Structural Units in PDB entry:
3D0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D0F entry

There are 2 chains in PDB entry 3D0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 316PRO 420
B
 ASN 316PRO 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3D0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
333 341Right-handed alpha
Helix 2
2
A
376 381Right-handed 310
Helix 3
3
A
383 387Right-handed 310
Helix 4
4
A
393 397Right-handed 310
Helix 5
5
B
333 341Right-handed alpha
Helix 6
6
B
378 381Right-handed 310
Helix 7
7
B
383 387Right-handed 310
Helix 8
8
B
390 394Right-handed 310
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There are 4 sheets in PDB entry 3D0F. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
B
402 408anti-parallel
Strand 3
B
351 359anti-parallel
Strand 4
B
362 367anti-parallel
Strand 5
B
372 376anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
B
402 408anti-parallel
Strand 3
B
414 417anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
351 359anti-parallel
Strand 4
A
402 408anti-parallel
Strand 5
A
414 417anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
351 359anti-parallel
Strand 4
A
402 408anti-parallel
Strand 5
B
323 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il