Analysis of interatomic Contacts of Structural Units in PDB entry:
3D0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D0K entry

There are 2 chains in PDB entry 3D0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5ALA 296
B
 LYS 2ALA 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3D0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
63 71Right-handed alpha
Helix 3
3
A
71 79Right-handed alpha
Helix 4
4
A
93 98Right-handed alpha
Helix 5
5
A
112 118Right-handed 310
Helix 6
6
A
119 131Right-handed alpha
Helix 7
7
A
145 158Right-handed alpha
Helix 8
8
A
193 203Right-handed alpha
Helix 9
9
A
224 229Right-handed alpha
Helix 10
10
A
233 252Right-handed alpha
Helix 11
11
A
269 283Right-handed alpha
Helix 12
12
A
288 296Right-handed alpha
Helix 13
13
B
2 6Right-handed 310
Helix 14
14
B
7 16Right-handed alpha
Helix 15
15
B
63 71Right-handed alpha
Helix 16
16
B
71 79Right-handed alpha
Helix 17
17
B
93 98Right-handed alpha
Helix 18
18
B
112 118Right-handed 310
Helix 19
19
B
119 131Right-handed alpha
Helix 20
20
B
145 158Right-handed alpha
Helix 21
21
B
193 203Right-handed alpha
Helix 22
22
B
224 229Right-handed alpha
Helix 23
23
B
233 252Right-handed alpha
Helix 24
24
B
269 283Right-handed alpha
Helix 25
25
B
288 296Right-handed alpha
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There are 2 sheets in PDB entry 3D0K. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 26first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
53 57parallel
Strand 5
A
139 144parallel
Strand 6
A
165 169parallel
Strand 7
A
206 210parallel
Strand 8
A
259 263parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 26first strand
Strand 2
B
37 43anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
53 57parallel
Strand 5
B
139 144parallel
Strand 6
B
165 169parallel
Strand 7
B
206 210parallel
Strand 8
B
259 263parallel
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