Analysis of interatomic Contacts of Structural Units in PDB entry:
3D0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D0Q entry

There are 2 chains in PDB entry 3D0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2ILE 374
B
 HIS -2ILE 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3D0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 25Right-handed alpha
Helix 3
3
A
36 42Right-handed alpha
Helix 4
4
A
55 67Right-handed alpha
Helix 5
5
A
73 77Right-handed 310
Helix 6
6
A
81 84Right-handed 310
Helix 7
7
A
85 94Right-handed alpha
Helix 8
8
A
96 108Right-handed alpha
Helix 9
9
A
118 129Right-handed alpha
Helix 10
10
A
144 151Right-handed alpha
Helix 11
11
A
153 160Right-handed alpha
Helix 12
12
A
175 179Right-handed 310
Helix 13
13
A
218 226Right-handed alpha
Helix 14
14
A
227 229Right-handed 310
Helix 15
15
A
230 238Right-handed alpha
Helix 16
16
A
253 257Right-handed 310
Helix 17
17
A
270 276Right-handed alpha
Helix 18
18
A
286 296Right-handed alpha
Helix 19
19
A
311 322Right-handed alpha
Helix 20
20
A
333 343Right-handed alpha
Helix 21
21
A
343 359Right-handed alpha
Helix 22
22
A
362 374Right-handed alpha
Helix 23
23
B
12 14Right-handed 310
Helix 24
24
B
15 25Right-handed alpha
Helix 25
25
B
36 42Right-handed alpha
Helix 26
26
B
55 67Right-handed alpha
Helix 27
27
B
73 77Right-handed 310
Helix 28
28
B
81 84Right-handed 310
Helix 29
29
B
85 94Right-handed alpha
Helix 30
30
B
96 108Right-handed alpha
Helix 31
31
B
118 129Right-handed alpha
Helix 32
32
B
144 152Right-handed alpha
Helix 33
33
B
153 161Right-handed alpha
Helix 34
34
B
175 179Right-handed 310
Helix 35
35
B
218 226Right-handed alpha
Helix 36
36
B
227 229Right-handed 310
Helix 37
37
B
230 238Right-handed alpha
Helix 38
38
B
253 257Right-handed 310
Helix 39
39
B
270 276Right-handed alpha
Helix 40
40
B
286 297Right-handed alpha
Helix 41
41
B
311 322Right-handed alpha
Helix 42
42
B
333 343Right-handed alpha
Helix 43
43
B
343 359Right-handed alpha
Helix 44
44
B
362 374Right-handed alpha
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There are 4 sheets in PDB entry 3D0Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
169 172parallel
Strand 3
A
132 135parallel
Strand 4
A
111 115parallel
Strand 5
A
0 4parallel
Strand 6
A
28 33parallel
Strand 7
A
46 49parallel
Strand 8
B
198 201parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
B
46 49parallel
Strand 3
B
28 33parallel
Strand 4
B
0 4parallel
Strand 5
B
111 115parallel
Strand 6
B
132 135parallel
Strand 7
B
169 172parallel
Strand 8
B
186 188parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
243 247parallel
Strand 3
A
212 216parallel
Strand 4
A
278 283parallel
Strand 5
A
300 302parallel
Strand 6
A
324 326parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
243 247parallel
Strand 3
B
212 216parallel
Strand 4
B
278 283parallel
Strand 5
B
300 302parallel
Strand 6
B
324 326parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il