Analysis of interatomic Contacts of Structural Units in PDB entry:
3D0R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D0R entry

There are 2 chains in PDB entry 3D0R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2SER 375
B
 ILE -6ILE 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3D0R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 25Right-handed alpha
Helix 3
3
A
36 42Right-handed alpha
Helix 4
4
A
55 67Right-handed alpha
Helix 5
5
A
67 73Right-handed alpha
Helix 6
6
A
74 77Right-handed 310
Helix 7
7
A
82 84Right-handed 310
Helix 8
8
A
85 94Right-handed alpha
Helix 9
9
A
96 108Right-handed alpha
Helix 10
10
A
118 129Right-handed alpha
Helix 11
11
A
144 151Right-handed alpha
Helix 12
12
A
153 160Right-handed alpha
Helix 13
13
A
175 179Right-handed 310
Helix 14
14
A
218 226Right-handed alpha
Helix 15
15
A
227 229Right-handed 310
Helix 16
16
A
230 238Right-handed alpha
Helix 17
17
A
253 257Right-handed 310
Helix 18
18
A
270 276Right-handed alpha
Helix 19
19
A
288 297Right-handed alpha
Helix 20
20
A
311 322Right-handed alpha
Helix 21
21
A
328 332Right-handed 310
Helix 22
22
A
333 343Right-handed alpha
Helix 23
23
A
343 359Right-handed alpha
Helix 24
24
A
362 374Right-handed alpha
Helix 25
25
B
12 14Right-handed 310
Helix 26
26
B
15 25Right-handed alpha
Helix 27
27
B
36 42Right-handed alpha
Helix 28
28
B
55 67Right-handed alpha
Helix 29
29
B
73 77Right-handed 310
Helix 30
30
B
81 84Right-handed 310
Helix 31
31
B
85 94Right-handed alpha
Helix 32
32
B
96 108Right-handed alpha
Helix 33
33
B
118 129Right-handed alpha
Helix 34
34
B
144 151Right-handed alpha
Helix 35
35
B
153 161Right-handed alpha
Helix 36
36
B
175 179Right-handed 310
Helix 37
37
B
218 226Right-handed alpha
Helix 38
38
B
227 229Right-handed 310
Helix 39
39
B
230 238Right-handed alpha
Helix 40
40
B
253 257Right-handed 310
Helix 41
41
B
270 276Right-handed alpha
Helix 42
42
B
288 297Right-handed alpha
Helix 43
43
B
311 322Right-handed alpha
Helix 44
44
B
328 332Right-handed 310
Helix 45
45
B
333 343Right-handed alpha
Helix 46
46
B
343 359Right-handed alpha
Helix 47
47
B
362 374Right-handed alpha
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There are 4 sheets in PDB entry 3D0R. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
169 172parallel
Strand 3
A
132 135parallel
Strand 4
A
111 115parallel
Strand 5
A
0 4parallel
Strand 6
A
28 33parallel
Strand 7
A
46 49parallel
Strand 8
B
198 201parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
B
46 49parallel
Strand 3
B
28 33parallel
Strand 4
B
0 4parallel
Strand 5
B
111 115parallel
Strand 6
B
132 135parallel
Strand 7
B
169 172parallel
Strand 8
B
186 188parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
244 247parallel
Strand 3
A
212 216parallel
Strand 4
A
278 283parallel
Strand 5
A
300 302parallel
Strand 6
A
324 326parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
244 247parallel
Strand 3
B
212 216parallel
Strand 4
B
278 283parallel
Strand 5
B
300 302parallel
Strand 6
B
324 326parallel
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