Analysis of interatomic Contacts of Structural Units in PDB entry:
3D11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D11 entry

There is 1 chain in PDB entry 3D11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 177ALA 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 3D11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
204 207Right-handed 310
Helix 2
2
A
302 307Right-handed 310
Helix 3
3
A
327 331Right-handed alpha
Helix 4
4
A
373 375Right-handed 310
Helix 5
5
A
378 382Right-handed 310
Helix 6
6
A
393 398Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 3D11. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
558 568anti-parallel
Strand 3
A
571 582anti-parallel
Strand 4
A
587 596anti-parallel
Strand 5
A
201 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 225first strand
Strand 2
A
228 237anti-parallel
Strand 3
A
244 257anti-parallel
Strand 4
A
263 271anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 287first strand
Strand 2
A
290 297anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
332 335anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
426 430parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
361 371anti-parallel
Strand 5
A
347 350anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
426 430parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
361 371anti-parallel
Strand 5
A
356 358anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 447first strand
Strand 2
A
450 455anti-parallel
Strand 3
A
465 471anti-parallel
Strand 4
A
476 479anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
520 526anti-parallel
Strand 3
A
535 540anti-parallel
Strand 4
A
545 550anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il