Analysis of interatomic Contacts of Structural Units in PDB entry:
3D1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D1M entry

There are 4 chains in PDB entry 3D1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 41ALA 188
B
 LEU 40GLU 189
C
 GLY 829LYS 924
D
 PRO 826LYS 924
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3D1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 77Right-handed 310
Helix 2
2
A
94 96Right-handed 310
Helix 3
3
A
100 118Right-handed alpha
Helix 4
4
A
139 144Right-handed 310
Helix 5
5
A
155 157Right-handed 310
Helix 6
6
A
158 169Right-handed alpha
Helix 7
7
B
72 77Right-handed 310
Helix 8
8
B
94 96Right-handed 310
Helix 9
9
B
100 118Right-handed alpha
Helix 10
10
B
139 144Right-handed 310
Helix 11
11
B
155 157Right-handed 310
Helix 12
12
B
158 169Right-handed alpha
Helix 13
13
D
850 855Right-handed 310
Helix 14
14
D
873 877Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 3D1M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
173 178anti-parallel
Strand 3
A
181 185anti-parallel
Strand 4
A
146 151anti-parallel
Strand 5
A
123 127anti-parallel
Strand 6
A
85 87parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
173 178anti-parallel
Strand 3
B
181 185anti-parallel
Strand 4
B
146 151anti-parallel
Strand 5
B
123 127anti-parallel
Strand 6
B
85 87parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
831 837first strand
Strand 2
C
843 848anti-parallel
Strand 3
C
888 891anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
878 883first strand
Strand 2
C
861 868anti-parallel
Strand 3
C
899 908anti-parallel
Strand 4
C
911 912anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
878 883first strand
Strand 2
C
861 868anti-parallel
Strand 3
C
899 908anti-parallel
Strand 4
C
919 922anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
831 837first strand
Strand 2
D
843 848anti-parallel
Strand 3
D
888 891anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
878 883first strand
Strand 2
D
861 868anti-parallel
Strand 3
D
899 907anti-parallel
Strand 4
D
919 922anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il