Analysis of interatomic Contacts of Structural Units in PDB entry:
3D1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D1R entry

There is 1 chain in PDB entry 3D1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3D1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 4Right-handed 310
Helix 2
2
A
5 22Right-handed alpha
Helix 3
3
A
28 45Right-handed alpha
Helix 4
4
A
89 95Right-handed alpha
Helix 5
5
A
127 130Right-handed 310
Helix 6
6
A
138 151Right-handed alpha
Helix 7
7
A
153 156Right-handed 310
Helix 8
8
A
164 166Right-handed 310
Helix 9
9
A
167 178Right-handed alpha
Helix 10
10
A
187 194Right-handed alpha
Helix 11
11
A
195 197Right-handed 310
Helix 12
12
A
211 224Right-handed alpha
Helix 13
13
A
234 240Right-handed alpha
Helix 14
14
A
244 259Right-handed alpha
Helix 15
15
A
269 273Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3D1R. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
50 55anti-parallel
Strand 3
A
79 88parallel
Strand 4
A
101 108anti-parallel
Strand 5
A
278 284anti-parallel
Strand 6
A
300 309anti-parallel
Strand 7
A
295 297anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
50 55anti-parallel
Strand 3
A
79 88parallel
Strand 4
A
101 108anti-parallel
Strand 5
A
278 284anti-parallel
Strand 6
A
300 309anti-parallel
Strand 7
A
315 322anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
158 162parallel
Strand 3
A
204 210parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
227 233anti-parallel
Strand 6
A
266 268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il