Analysis of interatomic Contacts of Structural Units in PDB entry:
3D24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D24 entry

There are 4 chains in PDB entry 3D24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 194ALA 420
B
 ARG 205ASN 217
C
 ALA 192ASP 423
D
 ARG 205ASP 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3D24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
195 204Right-handed alpha
Helix 2
2
A
224 246Right-handed alpha
Helix 3
3
A
253 278Right-handed alpha
Helix 4
4
A
294 300Right-handed alpha
Helix 5
5
A
304 318Right-handed alpha
Helix 6
6
A
322 336Right-handed alpha
Helix 7
7
A
344 364Right-handed alpha
Helix 8
8
A
374 383Right-handed alpha
Helix 9
9
A
384 405Right-handed alpha
Helix 10
10
A
411 420Right-handed alpha
Helix 11
11
B
207 215Right-handed alpha
Helix 12
12
C
195 204Right-handed alpha
Helix 13
13
C
223 245Right-handed alpha
Helix 14
14
C
253 278Right-handed alpha
Helix 15
15
C
294 301Right-handed alpha
Helix 16
16
C
304 320Right-handed alpha
Helix 17
17
C
322 336Right-handed alpha
Helix 18
18
C
344 364Right-handed alpha
Helix 19
19
C
376 383Right-handed alpha
Helix 20
20
C
384 405Right-handed alpha
Helix 21
21
C
411 421Right-handed alpha
Helix 22
22
D
207 215Right-handed alpha
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There are 2 sheets in PDB entry 3D24. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
290 293anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 287first strand
Strand 2
C
290 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il