Analysis of interatomic Contacts of Structural Units in PDB entry:
3D2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D2F entry

There are 4 chains in PDB entry 3D2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 2ARG 654
B
ALA 4GLY 382
C
SER 2SER 655
D
ALA 4GLY 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 3D2F. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
50 58Right-handed alpha
Helix 2
2
A
59 62Right-handed 310
Helix 3
3
A
67 72Right-handed alpha
Helix 4
4
A
80 86Right-handed alpha
Helix 5
5
A
115 135Right-handed alpha
Helix 6
6
A
150 164Right-handed alpha
Helix 7
7
A
174 186Right-handed alpha
Helix 8
8
A
233 253Right-handed alpha
Helix 9
9
A
256 259Right-handed 310
Helix 10
10
A
260 281Right-handed alpha
Helix 11
11
A
303 310Right-handed alpha
Helix 12
12
A
310 315Right-handed alpha
Helix 13
13
A
318 329Right-handed alpha
Helix 14
14
A
331 335Right-handed 310
Helix 15
15
A
342 346Right-handed 310
Helix 16
16
A
347 359Right-handed alpha
Helix 17
17
A
370 383Right-handed alpha
Helix 18
18
A
447 451Right-handed 310
Helix 19
19
A
543 586Right-handed alpha
Helix 20
20
A
589 593Right-handed 310
Helix 21
21
A
594 612Right-handed alpha
Helix 22
22
A
613 619Right-handed 310
Helix 23
23
A
620 654Right-handed alpha
Helix 24
24
B
52 58Right-handed alpha
Helix 25
25
B
59 62Right-handed 310
Helix 26
26
B
69 74Right-handed alpha
Helix 27
27
B
80 88Right-handed alpha
Helix 28
28
B
115 136Right-handed alpha
Helix 29
29
B
151 165Right-handed alpha
Helix 30
30
B
175 183Right-handed alpha
Helix 31
31
B
184 188Right-handed 310
Helix 32
32
B
230 250Right-handed alpha
Helix 33
33
B
256 274Right-handed alpha
Helix 34
34
B
299 306Right-handed alpha
Helix 35
35
B
306 312Right-handed alpha
Helix 36
36
B
314 324Right-handed alpha
Helix 37
37
B
327 331Right-handed 310
Helix 38
38
B
338 342Right-handed 310
Helix 39
39
B
343 354Right-handed alpha
Helix 40
40
B
367 382Right-handed alpha
Helix 41
41
C
50 57Right-handed alpha
Helix 42
42
C
60 62Right-handed 310
Helix 43
43
C
67 72Right-handed alpha
Helix 44
44
C
80 86Right-handed alpha
Helix 45
45
C
115 135Right-handed alpha
Helix 46
46
C
150 164Right-handed alpha
Helix 47
47
C
174 186Right-handed alpha
Helix 48
48
C
233 253Right-handed alpha
Helix 49
49
C
256 259Right-handed 310
Helix 50
50
C
260 281Right-handed alpha
Helix 51
51
C
303 310Right-handed alpha
Helix 52
52
C
310 315Right-handed alpha
Helix 53
53
C
318 328Right-handed alpha
Helix 54
54
C
331 335Right-handed 310
Helix 55
55
C
342 346Right-handed 310
Helix 56
56
C
347 359Right-handed alpha
Helix 57
57
C
370 383Right-handed alpha
Helix 58
58
C
447 451Right-handed 310
Helix 59
59
C
543 587Right-handed alpha
Helix 60
60
C
589 593Right-handed 310
Helix 61
61
C
594 614Right-handed alpha
Helix 62
62
C
620 648Right-handed alpha
Helix 63
63
C
649 655Right-handed alpha
Helix 64
64
D
52 58Right-handed alpha
Helix 65
65
D
69 73Right-handed 310
Helix 66
66
D
80 88Right-handed alpha
Helix 67
67
D
115 136Right-handed alpha
Helix 68
68
D
151 165Right-handed alpha
Helix 69
69
D
175 183Right-handed alpha
Helix 70
70
D
184 188Right-handed 310
Helix 71
71
D
230 250Right-handed alpha
Helix 72
72
D
256 274Right-handed alpha
Helix 73
73
D
299 306Right-handed alpha
Helix 74
74
D
306 312Right-handed alpha
Helix 75
75
D
314 324Right-handed alpha
Helix 76
76
D
327 331Right-handed 310
Helix 77
77
D
338 342Right-handed 310
Helix 78
78
D
343 354Right-handed alpha
Helix 79
79
D
367 381Right-handed alpha
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There are 28 sheets in PDB entry 3D2F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 27first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
36 37anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 27first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
5 8anti-parallel
Strand 4
A
140 145parallel
Strand 5
A
167 173parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 49first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
64 65anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 94first strand
Strand 2
A
100 106anti-parallel
Strand 3
A
109 114anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
362 363first strand
Strand 2
A
337 341parallel
Strand 3
A
197 204parallel
Strand 4
A
209 217anti-parallel
Strand 5
A
220 229anti-parallel
Strand 6
A
393 398parallel
Strand 7
A
423 425anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
283 288first strand
Strand 2
A
297 302anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
415 419first strand
Strand 2
A
402 406anti-parallel
Strand 3
A
439 445anti-parallel
Strand 4
A
458 465anti-parallel
Strand 5
A
534 538anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
427 435first strand
Strand 2
A
476 484anti-parallel
Strand 3
A
490 498anti-parallel
Strand 4
A
529 532anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
25 28first strand
Strand 2
B
15 22anti-parallel
Strand 3
B
38 39anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
25 28first strand
Strand 2
B
15 22anti-parallel
Strand 3
B
7 10anti-parallel
Strand 4
B
141 146parallel
Strand 5
B
168 174parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
49 51first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
66 67anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
93 97first strand
Strand 2
B
100 107anti-parallel
Strand 3
B
110 114anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
216 224first strand
Strand 2
B
205 213anti-parallel
Strand 3
B
193 200anti-parallel
Strand 4
B
333 337parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
279 288first strand
Strand 2
B
291 298anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
23 27first strand
Strand 2
C
13 20anti-parallel
Strand 3
C
36 37anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
23 27first strand
Strand 2
C
13 20anti-parallel
Strand 3
C
5 9anti-parallel
Strand 4
C
140 145parallel
Strand 5
C
167 173parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
47 49first strand
Strand 2
C
40 42anti-parallel
Strand 3
C
64 65anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
91 94first strand
Strand 2
C
100 106anti-parallel
Strand 3
C
109 114anti-parallel
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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
362 363first strand
Strand 2
C
337 341parallel
Strand 3
C
197 204parallel
Strand 4
C
209 217anti-parallel
Strand 5
C
220 229anti-parallel
Strand 6
C
393 398parallel
Strand 7
C
423 425anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
283 288first strand
Strand 2
C
297 302anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
415 419first strand
Strand 2
C
402 406anti-parallel
Strand 3
C
439 445anti-parallel
Strand 4
C
458 465anti-parallel
Strand 5
C
534 538anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
427 435first strand
Strand 2
C
476 484anti-parallel
Strand 3
C
490 497anti-parallel
Strand 4
C
531 532anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
25 28first strand
Strand 2
D
15 22anti-parallel
Strand 3
D
38 39anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
25 28first strand
Strand 2
D
15 22anti-parallel
Strand 3
D
7 10anti-parallel
Strand 4
D
141 146parallel
Strand 5
D
168 174parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
49 51first strand
Strand 2
D
42 44anti-parallel
Strand 3
D
66 67anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
93 96first strand
Strand 2
D
101 106anti-parallel
Strand 3
D
111 114anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
216 225first strand
Strand 2
D
204 213anti-parallel
Strand 3
D
193 201anti-parallel
Strand 4
D
333 337parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
279 284first strand
Strand 2
D
293 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il