Analysis of interatomic Contacts of Structural Units in PDB entry:
3D2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D2J entry

There is 1 chain in PDB entry 3D2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23TYR 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3D2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 34Right-handed alpha
Helix 2
2
A
48 57Right-handed alpha
Helix 3
3
A
60 64Right-handed 310
Helix 4
4
A
79 93Right-handed alpha
Helix 5
5
A
144 156Right-handed alpha
Helix 6
6
A
170 177Right-handed alpha
Helix 7
7
A
183 188Right-handed alpha
Helix 8
8
A
190 192Right-handed 310
Helix 9
9
A
208 213Right-handed alpha
Helix 10
10
A
213 221Right-handed alpha
Helix 11
11
A
255 273Right-handed alpha
Helix 12
12
A
301 313Right-handed alpha
Helix 13
13
A
314 317Right-handed 310
Helix 14
14
A
319 323Right-handed 310
Helix 15
15
A
327 336Right-handed alpha
Helix 16
16
A
340 346Right-handed 310
Helix 17
17
A
368 381Right-handed alpha
Helix 18
18
A
393 398Right-handed 310
Helix 19
19
A
423 428Right-handed 310
Helix 20
20
A
429 445Right-handed alpha
Helix 21
21
A
446 448Right-handed 310
Helix 22
22
A
456 460Right-handed 310
Helix 23
23
A
461 465Right-handed 310
Helix 24
24
A
471 477Right-handed alpha
Helix 25
25
A
477 491Right-handed alpha
Helix 26
26
A
493 505Right-handed alpha
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There are 4 sheets in PDB entry 3D2J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
73 75anti-parallel
Strand 3
A
117 121parallel
Strand 4
A
96 100parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
136 140anti-parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
194 200anti-parallel
Strand 5
A
206 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
239 240anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
245 254anti-parallel
Strand 3
A
289 298anti-parallel
Strand 4
A
277 286anti-parallel
Strand 5
A
385 391anti-parallel
Strand 6
A
414 422anti-parallel
Strand 7
A
355 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il