Analysis of interatomic Contacts of Structural Units in PDB entry:
3D2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D2P entry

There are 2 chains in PDB entry 3D2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5ARG 436
B
 ASP 5ARG 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3D2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 22Right-handed alpha
Helix 2
2
A
32 35Right-handed 310
Helix 3
3
A
37 53Right-handed alpha
Helix 4
4
A
63 73Right-handed alpha
Helix 5
5
A
88 112Right-handed alpha
Helix 6
6
A
154 164Right-handed alpha
Helix 7
7
A
185 197Right-handed alpha
Helix 8
8
A
224 233Right-handed alpha
Helix 9
9
A
235 252Right-handed alpha
Helix 10
10
A
265 273Right-handed alpha
Helix 11
11
A
293 295Right-handed 310
Helix 12
12
A
296 305Right-handed alpha
Helix 13
13
A
324 326Right-handed 310
Helix 14
14
A
361 364Right-handed 310
Helix 15
15
A
367 382Right-handed alpha
Helix 16
16
A
395 401Right-handed alpha
Helix 17
17
A
413 420Right-handed alpha
Helix 18
18
B
6 22Right-handed alpha
Helix 19
19
B
32 35Right-handed 310
Helix 20
20
B
37 53Right-handed alpha
Helix 21
21
B
63 73Right-handed alpha
Helix 22
22
B
88 112Right-handed alpha
Helix 23
23
B
154 164Right-handed alpha
Helix 24
24
B
185 198Right-handed alpha
Helix 25
25
B
224 232Right-handed alpha
Helix 26
26
B
235 251Right-handed alpha
Helix 27
27
B
265 273Right-handed alpha
Helix 28
28
B
293 295Right-handed 310
Helix 29
29
B
296 305Right-handed alpha
Helix 30
30
B
319 324Right-handed alpha
Helix 31
31
B
361 364Right-handed 310
Helix 32
32
B
367 383Right-handed alpha
Helix 33
33
B
395 401Right-handed alpha
Helix 34
34
B
408 412Right-handed 310
Helix 35
35
B
413 420Right-handed alpha
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There are 12 sheets in PDB entry 3D2P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
279 282parallel
Strand 3
A
255 260anti-parallel
Strand 4
A
201 206parallel
Strand 5
A
25 30parallel
Strand 6
A
56 61parallel
Strand 7
A
167 170parallel
Strand 8
A
125 128parallel
Strand 9
B
125 128anti-parallel
Strand 10
B
167 170parallel
Strand 11
B
56 61parallel
Strand 12
B
25 30parallel
Strand 13
B
201 206parallel
Strand 14
B
255 260parallel
Strand 15
B
279 282anti-parallel
Strand 16
B
221 223parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
148 153anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
142 143anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
181 183anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
328 333anti-parallel
Strand 3
A
336 345anti-parallel
Strand 4
A
352 359anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 392first strand
Strand 2
A
428 433anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
84 85anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
148 153anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
142 143anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
181 183anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
328 333anti-parallel
Strand 3
B
336 345anti-parallel
Strand 4
B
351 359anti-parallel
Strand 5
B
387 392parallel
Strand 6
B
428 433anti-parallel
Strand 7
B
405 406anti-parallel
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