Analysis of interatomic Contacts of Structural Units in PDB entry:
3D36


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D36 entry

There are 3 chains in PDB entry 3D36 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 191SER 416
B
 GLY 191SER 416
C
 MET 1ILE 42
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3D36. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
210 229Right-handed alpha
Helix 2
2
A
230 232Right-handed 310
Helix 3
3
A
235 262Right-handed alpha
Helix 4
4
A
276 292Right-handed alpha
Helix 5
5
A
310 328Right-handed alpha
Helix 6
6
A
358 365Right-handed alpha
Helix 7
7
A
373 377Right-handed 310
Helix 8
8
A
380 392Right-handed alpha
Helix 9
9
B
210 232Right-handed alpha
Helix 10
10
B
235 262Right-handed alpha
Helix 11
11
B
276 294Right-handed alpha
Helix 12
12
B
310 328Right-handed alpha
Helix 13
13
B
358 365Right-handed alpha
Helix 14
14
B
373 377Right-handed 310
Helix 15
15
B
380 392Right-handed alpha
Helix 16
16
C
5 19Right-handed alpha
Helix 17
17
C
22 36Right-handed alpha
Helix 18
18
C
38 42Right-handed 310
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There are 4 sheets in PDB entry 3D36. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
395 401anti-parallel
Strand 3
A
405 413anti-parallel
Strand 4
A
345 352anti-parallel
Strand 5
A
333 342anti-parallel
Strand 6
A
296 301parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
306 309anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
395 401anti-parallel
Strand 3
B
405 413anti-parallel
Strand 4
B
345 352anti-parallel
Strand 5
B
333 342anti-parallel
Strand 6
B
296 301parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 275first strand
Strand 2
B
306 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il