Analysis of interatomic Contacts of Structural Units in PDB entry:
3D37


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D37 entry

There are 2 chains in PDB entry 3D37 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 6PRO 347
B
 TYR 6PRO 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3D37. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
94 101Right-handed alpha
Helix 2
2
A
112 122Right-handed alpha
Helix 3
3
A
150 162Right-handed alpha
Helix 4
4
A
258 277Right-handed alpha
Helix 5
5
B
94 101Right-handed alpha
Helix 6
6
B
112 122Right-handed alpha
Helix 7
7
B
150 162Right-handed alpha
Helix 8
8
B
259 277Right-handed alpha
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There are 8 sheets in PDB entry 3D37. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
10 14anti-parallel
Strand 3
A
58 63anti-parallel
Strand 4
A
66 81anti-parallel
Strand 5
A
84 93anti-parallel
Strand 6
A
37 42anti-parallel
Strand 7
A
24 30anti-parallel
Strand 8
A
310 324anti-parallel
Strand 9
A
300 305anti-parallel
Strand 10
A
187 191parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
10 14anti-parallel
Strand 3
A
58 63anti-parallel
Strand 4
A
66 81anti-parallel
Strand 5
A
84 93anti-parallel
Strand 6
A
37 42anti-parallel
Strand 7
A
24 30anti-parallel
Strand 8
A
310 324anti-parallel
Strand 9
A
328 337anti-parallel
Strand 10
A
278 285anti-parallel
Strand 11
A
202 207anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
174 177parallel
Strand 3
A
165 168anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 239first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
249 252parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
10 14anti-parallel
Strand 3
B
58 63anti-parallel
Strand 4
B
66 80anti-parallel
Strand 5
B
85 93anti-parallel
Strand 6
B
37 42anti-parallel
Strand 7
B
24 30anti-parallel
Strand 8
B
310 324anti-parallel
Strand 9
B
300 305anti-parallel
Strand 10
B
188 191parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
10 14anti-parallel
Strand 3
B
58 63anti-parallel
Strand 4
B
66 80anti-parallel
Strand 5
B
85 93anti-parallel
Strand 6
B
37 42anti-parallel
Strand 7
B
24 30anti-parallel
Strand 8
B
310 324anti-parallel
Strand 9
B
328 337anti-parallel
Strand 10
B
278 285anti-parallel
Strand 11
B
200 207anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
174 177parallel
Strand 3
B
165 168anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 239first strand
Strand 2
B
215 219anti-parallel
Strand 3
B
248 252parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il