Analysis of interatomic Contacts of Structural Units in PDB entry:
3D3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D3E entry

There are 4 chains in PDB entry 3D3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 21TYR 284
B
 GLN 21SER 281
C
 GLN 21SER 281
D
 GLN 21SER 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3D3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 33Right-handed 310
Helix 2
2
A
44 56Right-handed alpha
Helix 3
3
A
67 81Right-handed alpha
Helix 4
4
A
95 110Right-handed alpha
Helix 5
5
A
132 144Right-handed alpha
Helix 6
6
A
144 161Right-handed alpha
Helix 7
7
A
172 174Right-handed 310
Helix 8
8
A
180 204Right-handed alpha
Helix 9
9
A
220 227Right-handed alpha
Helix 10
10
A
237 251Right-handed alpha
Helix 11
11
A
261 266Right-handed alpha
Helix 12
12
A
270 280Right-handed alpha
Helix 13
13
B
28 33Right-handed 310
Helix 14
14
B
44 57Right-handed alpha
Helix 15
15
B
67 82Right-handed alpha
Helix 16
16
B
95 111Right-handed alpha
Helix 17
17
B
132 144Right-handed alpha
Helix 18
18
B
144 161Right-handed alpha
Helix 19
19
B
170 174Right-handed 310
Helix 20
20
B
180 205Right-handed alpha
Helix 21
21
B
220 227Right-handed alpha
Helix 22
22
B
237 251Right-handed alpha
Helix 23
23
B
261 269Right-handed alpha
Helix 24
24
B
270 281Right-handed alpha
Helix 25
25
C
28 33Right-handed 310
Helix 26
26
C
44 57Right-handed alpha
Helix 27
27
C
67 82Right-handed alpha
Helix 28
28
C
95 111Right-handed alpha
Helix 29
29
C
132 144Right-handed alpha
Helix 30
30
C
144 161Right-handed alpha
Helix 31
31
C
172 174Right-handed 310
Helix 32
32
C
180 204Right-handed alpha
Helix 33
33
C
220 227Right-handed alpha
Helix 34
34
C
237 251Right-handed alpha
Helix 35
35
C
264 268Right-handed 310
Helix 36
36
C
270 278Right-handed alpha
Helix 37
37
D
28 33Right-handed 310
Helix 38
38
D
44 56Right-handed alpha
Helix 39
39
D
67 82Right-handed alpha
Helix 40
40
D
95 111Right-handed alpha
Helix 41
41
D
132 143Right-handed alpha
Helix 42
42
D
144 161Right-handed alpha
Helix 43
43
D
172 174Right-handed 310
Helix 44
44
D
180 204Right-handed alpha
Helix 45
45
D
220 227Right-handed alpha
Helix 46
46
D
237 251Right-handed alpha
Helix 47
47
D
261 267Right-handed alpha
Helix 48
48
D
270 278Right-handed alpha
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There are 4 sheets in PDB entry 3D3E. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
60 65parallel
Strand 3
A
36 40parallel
Strand 4
A
115 118parallel
Strand 5
A
164 170parallel
Strand 6
A
209 215parallel
Strand 7
A
255 258parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
60 63parallel
Strand 3
B
36 39parallel
Strand 4
B
115 118parallel
Strand 5
B
164 168parallel
Strand 6
B
209 215parallel
Strand 7
B
255 258parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 90first strand
Strand 2
C
60 65parallel
Strand 3
C
36 39parallel
Strand 4
C
115 118parallel
Strand 5
C
164 170parallel
Strand 6
C
209 215parallel
Strand 7
C
255 258parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 90first strand
Strand 2
D
60 65parallel
Strand 3
D
36 39parallel
Strand 4
D
115 118parallel
Strand 5
D
164 170parallel
Strand 6
D
209 215parallel
Strand 7
D
255 258parallel
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