Analysis of interatomic Contacts of Structural Units in PDB entry:
3D3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D3J entry

There is 1 chain in PDB entry 3D3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 258SER 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3D3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
283 297Right-handed alpha
Helix 2
2
A
300 321Right-handed alpha
Helix 3
3
A
344 360Right-handed alpha
Helix 4
4
A
375 387Right-handed alpha
Helix 5
5
A
416 421Right-handed 310
Helix 6
6
A
422 435Right-handed alpha
Helix 7
7
A
468 472Right-handed 310
Helix 8
8
A
482 489Right-handed alpha
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There are 2 sheets in PDB entry 3D3J. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
278 280anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
363 367parallel
Strand 3
A
336 341parallel
Strand 4
A
406 410parallel
Strand 5
A
439 442parallel
Strand 6
A
457 461parallel
Strand 7
A
473 477parallel
Strand 8
A
502 504anti-parallel
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