Analysis of interatomic Contacts of Structural Units in PDB entry:
3D41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D41 entry

There is 1 chain in PDB entry 3D41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -8THR 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3D41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 15Right-handed 310
Helix 2
2
A
25 43Right-handed alpha
Helix 3
3
A
53 64Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
73 93Right-handed alpha
Helix 6
6
A
101 104Right-handed 310
Helix 7
7
A
118 126Right-handed alpha
Helix 8
8
A
148 150Right-handed 310
Helix 9
9
A
151 157Right-handed alpha
Helix 10
10
A
194 200Right-handed alpha
Helix 11
11
A
211 226Right-handed alpha
Helix 12
12
A
241 246Right-handed 310
Helix 13
13
A
247 251Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3D41. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
129 133parallel
Strand 3
A
47 51parallel
Strand 4
A
5 10parallel
Strand 5
A
164 170parallel
Strand 6
A
229 234parallel
Strand 7
A
257 261anti-parallel
Strand 8
A
188 190parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
112 115anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
144 147anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
184 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il