Analysis of interatomic Contacts of Structural Units in PDB entry:
3D45


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D45 entry

There are 2 chains in PDB entry 3D45 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 901ALA 503
B
 GLY 901TYR 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3D45. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 22Right-handed alpha
Helix 2
2
A
49 62Right-handed alpha
Helix 3
3
A
110 118Right-handed alpha
Helix 4
4
A
122 128Right-handed alpha
Helix 5
5
A
135 146Right-handed alpha
Helix 6
6
A
253 261Right-handed alpha
Helix 7
7
A
263 274Right-handed alpha
Helix 8
8
A
282 294Right-handed alpha
Helix 9
9
A
300 312Right-handed alpha
Helix 10
10
A
318 322Right-handed alpha
Helix 11
11
A
326 331Right-handed alpha
Helix 12
12
A
335 343Right-handed alpha
Helix 13
13
A
371 391Right-handed alpha
Helix 14
14
A
408 412Right-handed 310
Helix 15
15
A
436 438Right-handed 310
Helix 16
16
A
450 458Right-handed alpha
Helix 17
17
A
459 462Right-handed 310
Helix 18
18
A
480 492Right-handed alpha
Helix 19
19
B
7 22Right-handed alpha
Helix 20
20
B
39 44Right-handed alpha
Helix 21
21
B
49 62Right-handed alpha
Helix 22
22
B
110 119Right-handed alpha
Helix 23
23
B
122 128Right-handed alpha
Helix 24
24
B
135 143Right-handed alpha
Helix 25
25
B
252 255Right-handed 310
Helix 26
26
B
256 261Right-handed alpha
Helix 27
27
B
263 274Right-handed alpha
Helix 28
28
B
282 294Right-handed alpha
Helix 29
29
B
300 312Right-handed alpha
Helix 30
30
B
318 322Right-handed alpha
Helix 31
31
B
326 331Right-handed alpha
Helix 32
32
B
335 343Right-handed alpha
Helix 33
33
B
371 391Right-handed alpha
Helix 34
34
B
408 412Right-handed 310
Helix 35
35
B
450 458Right-handed alpha
Helix 36
36
B
459 462Right-handed 310
Helix 37
37
B
482 490Right-handed alpha
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There are 8 sheets in PDB entry 3D45. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
83 91parallel
Strand 3
A
66 76anti-parallel
Strand 4
A
24 31anti-parallel
Strand 5
A
276 279parallel
Strand 6
A
315 317parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
83 91parallel
Strand 3
A
353 355parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
B
105 109anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
426 427anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 468first strand
Strand 2
A
473 477anti-parallel
Strand 3
A
440 444anti-parallel
Strand 4
A
498 499anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 3first strand
Strand 2
B
83 91parallel
Strand 3
B
66 76anti-parallel
Strand 4
B
24 31anti-parallel
Strand 5
B
276 279parallel
Strand 6
B
315 317parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 3first strand
Strand 2
B
83 91parallel
Strand 3
B
353 355parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
465 470first strand
Strand 2
B
473 477anti-parallel
Strand 3
B
440 444anti-parallel
Strand 4
B
498 501anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il