Analysis of interatomic Contacts of Structural Units in PDB entry:
3D47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D47 entry

There are 8 chains in PDB entry 3D47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 405
B
 MET 1HIS 405
C
 MET 1HIS 405
D
 MET 1HIS 405
E
 MET 1HIS 405
F
 MET 1HIS 405
G
 MET 1HIS 405
H
 MET 1HIS 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are144 helices in PDB entry 3D47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
52 56Right-handed 310
Helix 3
3
A
59 63Right-handed 310
Helix 4
4
A
88 99Right-handed alpha
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
111 128Right-handed alpha
Helix 7
7
A
131 153Right-handed alpha
Helix 8
8
A
155 160Right-handed alpha
Helix 9
9
A
176 184Right-handed alpha
Helix 10
10
A
195 197Right-handed 310
Helix 11
11
A
198 218Right-handed alpha
Helix 12
12
A
232 244Right-handed alpha
Helix 13
13
A
245 247Right-handed 310
Helix 14
14
A
259 270Right-handed alpha
Helix 15
15
A
284 293Right-handed alpha
Helix 16
16
A
308 322Right-handed alpha
Helix 17
17
A
332 340Right-handed alpha
Helix 18
18
A
382 385Right-handed 310
Helix 19
19
B
39 43Right-handed 310
Helix 20
20
B
52 56Right-handed 310
Helix 21
21
B
59 63Right-handed 310
Helix 22
22
B
88 99Right-handed alpha
Helix 23
23
B
100 105Right-handed alpha
Helix 24
24
B
111 128Right-handed alpha
Helix 25
25
B
131 153Right-handed alpha
Helix 26
26
B
155 160Right-handed alpha
Helix 27
27
B
176 184Right-handed alpha
Helix 28
28
B
195 197Right-handed 310
Helix 29
29
B
198 218Right-handed alpha
Helix 30
30
B
232 244Right-handed alpha
Helix 31
31
B
245 247Right-handed 310
Helix 32
32
B
259 270Right-handed alpha
Helix 33
33
B
284 293Right-handed alpha
Helix 34
34
B
308 322Right-handed alpha
Helix 35
35
B
332 340Right-handed alpha
Helix 36
36
B
382 385Right-handed 310
Helix 37
37
C
39 43Right-handed 310
Helix 38
38
C
52 56Right-handed 310
Helix 39
39
C
59 63Right-handed 310
Helix 40
40
C
88 99Right-handed alpha
Helix 41
41
C
100 105Right-handed alpha
Helix 42
42
C
111 128Right-handed alpha
Helix 43
43
C
131 153Right-handed alpha
Helix 44
44
C
155 160Right-handed alpha
Helix 45
45
C
176 184Right-handed alpha
Helix 46
46
C
195 197Right-handed 310
Helix 47
47
C
198 218Right-handed alpha
Helix 48
48
C
232 244Right-handed alpha
Helix 49
49
C
245 247Right-handed 310
Helix 50
50
C
259 270Right-handed alpha
Helix 51
51
C
284 293Right-handed alpha
Helix 52
52
C
308 322Right-handed alpha
Helix 53
53
C
332 340Right-handed alpha
Helix 54
54
C
382 385Right-handed 310
Helix 55
55
D
39 43Right-handed 310
Helix 56
56
D
52 56Right-handed 310
Helix 57
57
D
59 63Right-handed 310
Helix 58
58
D
88 99Right-handed alpha
Helix 59
59
D
100 105Right-handed alpha
Helix 60
60
D
111 128Right-handed alpha
Helix 61
61
D
131 153Right-handed alpha
Helix 62
62
D
155 160Right-handed alpha
Helix 63
63
D
176 183Right-handed alpha
Helix 64
64
D
195 197Right-handed 310
Helix 65
65
D
198 218Right-handed alpha
Helix 66
66
D
232 244Right-handed alpha
Helix 67
67
D
245 247Right-handed 310
Helix 68
68
D
259 270Right-handed alpha
Helix 69
69
D
284 293Right-handed alpha
Helix 70
70
D
308 322Right-handed alpha
Helix 71
71
D
332 340Right-handed alpha
Helix 72
72
D
382 385Right-handed 310
Helix 73
73
E
39 43Right-handed 310
Helix 74
74
E
52 56Right-handed 310
Helix 75
75
E
59 63Right-handed 310
Helix 76
76
E
88 99Right-handed alpha
Helix 77
77
E
100 105Right-handed alpha
Helix 78
78
E
111 128Right-handed alpha
Helix 79
79
E
131 153Right-handed alpha
Helix 80
80
E
155 160Right-handed alpha
Helix 81
81
E
176 183Right-handed alpha
Helix 82
82
E
195 197Right-handed 310
Helix 83
83
E
198 218Right-handed alpha
Helix 84
84
E
232 244Right-handed alpha
Helix 85
85
E
245 247Right-handed 310
Helix 86
86
E
259 270Right-handed alpha
Helix 87
87
E
284 293Right-handed alpha
Helix 88
88
E
308 322Right-handed alpha
Helix 89
89
E
332 340Right-handed alpha
Helix 90
90
E
382 385Right-handed 310
Helix 91
91
F
39 43Right-handed 310
Helix 92
92
F
52 56Right-handed 310
Helix 93
93
F
59 63Right-handed 310
Helix 94
94
F
88 99Right-handed alpha
Helix 95
95
F
100 105Right-handed alpha
Helix 96
96
F
111 128Right-handed alpha
Helix 97
97
F
131 153Right-handed alpha
Helix 98
98
F
155 160Right-handed alpha
Helix 99
99
F
176 183Right-handed alpha
Helix 100
100
F
195 197Right-handed 310
Helix 101
101
F
198 218Right-handed alpha
Helix 102
102
F
232 244Right-handed alpha
Helix 103
103
F
245 247Right-handed 310
Helix 104
104
F
259 270Right-handed alpha
Helix 105
105
F
284 293Right-handed alpha
Helix 106
106
F
308 322Right-handed alpha
Helix 107
107
F
332 340Right-handed alpha
Helix 108
108
F
382 385Right-handed 310
Helix 109
109
G
39 43Right-handed 310
Helix 110
110
G
52 56Right-handed 310
Helix 111
111
G
59 63Right-handed 310
Helix 112
112
G
88 99Right-handed alpha
Helix 113
113
G
100 105Right-handed alpha
Helix 114
114
G
111 128Right-handed alpha
Helix 115
115
G
131 153Right-handed alpha
Helix 116
116
G
155 160Right-handed alpha
Helix 117
117
G
176 183Right-handed alpha
Helix 118
118
G
195 197Right-handed 310
Helix 119
119
G
198 218Right-handed alpha
Helix 120
120
G
232 244Right-handed alpha
Helix 121
121
G
245 247Right-handed 310
Helix 122
122
G
259 270Right-handed alpha
Helix 123
123
G
284 293Right-handed alpha
Helix 124
124
G
308 322Right-handed alpha
Helix 125
125
G
332 340Right-handed alpha
Helix 126
126
G
382 385Right-handed 310
Helix 127
127
H
39 43Right-handed 310
Helix 128
128
H
52 56Right-handed 310
Helix 129
129
H
59 63Right-handed 310
Helix 130
130
H
88 99Right-handed alpha
Helix 131
131
H
100 105Right-handed alpha
Helix 132
132
H
111 128Right-handed alpha
Helix 133
133
H
131 153Right-handed alpha
Helix 134
134
H
155 160Right-handed alpha
Helix 135
135
H
176 184Right-handed alpha
Helix 136
136
H
195 197Right-handed 310
Helix 137
137
H
198 218Right-handed alpha
Helix 138
138
H
232 244Right-handed alpha
Helix 139
139
H
245 247Right-handed 310
Helix 140
140
H
259 270Right-handed alpha
Helix 141
141
H
284 293Right-handed alpha
Helix 142
142
H
308 322Right-handed alpha
Helix 143
143
H
332 340Right-handed alpha
Helix 144
144
H
382 385Right-handed 310
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There are 32 sheets in PDB entry 3D47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 18first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
81 87anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
298 299parallel
Strand 3
A
275 278parallel
Strand 4
A
250 252parallel
Strand 5
A
222 226parallel
Strand 6
A
187 191parallel
Strand 7
A
167 173parallel
Strand 8
A
348 351parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
298 299parallel
Strand 3
A
275 278parallel
Strand 4
A
250 252parallel
Strand 5
A
222 226parallel
Strand 6
A
187 191parallel
Strand 7
A
167 173parallel
Strand 8
A
378 380anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
392 393anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 18first strand
Strand 2
B
69 76anti-parallel
Strand 3
B
81 87anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
298 299parallel
Strand 3
B
275 278parallel
Strand 4
B
250 252parallel
Strand 5
B
222 226parallel
Strand 6
B
187 191parallel
Strand 7
B
167 173parallel
Strand 8
B
348 351parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
298 299parallel
Strand 3
B
275 278parallel
Strand 4
B
250 252parallel
Strand 5
B
222 226parallel
Strand 6
B
187 191parallel
Strand 7
B
167 173parallel
Strand 8
B
378 380anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
392 393anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 18first strand
Strand 2
C
69 76anti-parallel
Strand 3
C
81 87anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 299first strand
Strand 2
C
275 278parallel
Strand 3
C
250 252parallel
Strand 4
C
222 226parallel
Strand 5
C
187 191parallel
Strand 6
C
167 173parallel
Strand 7
C
348 351parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 299first strand
Strand 2
C
275 278parallel
Strand 3
C
250 252parallel
Strand 4
C
222 226parallel
Strand 5
C
187 191parallel
Strand 6
C
167 173parallel
Strand 7
C
378 380anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
368 369first strand
Strand 2
C
392 393anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 18first strand
Strand 2
D
69 76anti-parallel
Strand 3
D
81 87anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
325 326first strand
Strand 2
D
298 299parallel
Strand 3
D
275 278parallel
Strand 4
D
250 252parallel
Strand 5
D
222 226parallel
Strand 6
D
187 191parallel
Strand 7
D
167 173parallel
Strand 8
D
348 351parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
325 326first strand
Strand 2
D
298 299parallel
Strand 3
D
275 278parallel
Strand 4
D
250 252parallel
Strand 5
D
222 226parallel
Strand 6
D
187 191parallel
Strand 7
D
167 173parallel
Strand 8
D
378 380anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
368 369first strand
Strand 2
D
392 393anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 18first strand
Strand 2
E
69 76anti-parallel
Strand 3
E
81 87anti-parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
325 326first strand
Strand 2
E
298 299parallel
Strand 3
E
275 278parallel
Strand 4
E
250 252parallel
Strand 5
E
222 226parallel
Strand 6
E
187 191parallel
Strand 7
E
167 173parallel
Strand 8
E
348 351parallel
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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
325 326first strand
Strand 2
E
298 299parallel
Strand 3
E
275 278parallel
Strand 4
E
250 252parallel
Strand 5
E
222 226parallel
Strand 6
E
187 191parallel
Strand 7
E
167 173parallel
Strand 8
E
378 380anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
368 369first strand
Strand 2
E
392 393anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 18first strand
Strand 2
F
69 76anti-parallel
Strand 3
F
81 87anti-parallel
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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
325 326first strand
Strand 2
F
298 299parallel
Strand 3
F
275 278parallel
Strand 4
F
250 252parallel
Strand 5
F
222 226parallel
Strand 6
F
187 191parallel
Strand 7
F
167 173parallel
Strand 8
F
348 351parallel
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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
325 326first strand
Strand 2
F
298 299parallel
Strand 3
F
275 278parallel
Strand 4
F
250 252parallel
Strand 5
F
222 226parallel
Strand 6
F
187 191parallel
Strand 7
F
167 173parallel
Strand 8
F
378 380anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
368 369first strand
Strand 2
F
392 393anti-parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
10 18first strand
Strand 2
G
69 76anti-parallel
Strand 3
G
81 87anti-parallel
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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
325 326first strand
Strand 2
G
298 299parallel
Strand 3
G
275 278parallel
Strand 4
G
250 252parallel
Strand 5
G
222 226parallel
Strand 6
G
187 191parallel
Strand 7
G
167 173parallel
Strand 8
G
348 351parallel
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There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
325 326first strand
Strand 2
G
298 299parallel
Strand 3
G
275 278parallel
Strand 4
G
250 252parallel
Strand 5
G
222 226parallel
Strand 6
G
187 191parallel
Strand 7
G
167 173parallel
Strand 8
G
378 380anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
368 369first strand
Strand 2
G
392 393anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 18first strand
Strand 2
H
69 76anti-parallel
Strand 3
H
81 87anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
325 326first strand
Strand 2
H
298 299parallel
Strand 3
H
275 278parallel
Strand 4
H
250 252parallel
Strand 5
H
222 226parallel
Strand 6
H
187 191parallel
Strand 7
H
167 173parallel
Strand 8
H
348 351parallel
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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
325 326first strand
Strand 2
H
298 299parallel
Strand 3
H
275 278parallel
Strand 4
H
250 252parallel
Strand 5
H
222 226parallel
Strand 6
H
187 191parallel
Strand 7
H
167 173parallel
Strand 8
H
378 380anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
368 369first strand
Strand 2
H
392 393anti-parallel
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