Analysis of interatomic Contacts of Structural Units in PDB entry:
3D4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D4C entry

There is 1 chain in PDB entry 3D4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5LEU 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3D4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 32Right-handed alpha
Helix 2
2
A
44 52Right-handed alpha
Helix 3
3
A
68 73Right-handed alpha
Helix 4
4
A
84 88Right-handed alpha
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
132 141Right-handed alpha
Helix 7
7
A
155 162Right-handed alpha
Helix 8
8
A
187 201Right-handed alpha
Helix 9
9
A
211 219Right-handed alpha
Helix 10
10
A
230 238Right-handed alpha
Helix 11
11
A
274 283Right-handed alpha
Helix 12
12
A
288 297Right-handed alpha
Helix 13
13
A
306 312Right-handed alpha
Helix 14
14
A
316 327Right-handed alpha
Helix 15
15
A
337 352Right-handed alpha
Helix 16
16
A
358 371Right-handed alpha
Helix 17
17
A
398 400Right-handed 310
Helix 18
18
A
425 428Right-handed alpha
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There are 12 sheets in PDB entry 3D4C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
7 12parallel
Strand 3
A
58 65parallel
Strand 4
A
258 268anti-parallel
Strand 5
A
106 113anti-parallel
Strand 6
A
301 303anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
106 113anti-parallel
Strand 3
A
258 268anti-parallel
Strand 4
A
328 330parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
258 268anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
304 305anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
103 104anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
223 229parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
243 247anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
250 251anti-parallel
Strand 3
A
254 255anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 173first strand
Strand 2
A
176 178anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 173first strand
Strand 2
A
181 184anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 377first strand
Strand 2
A
380 386anti-parallel
Strand 3
A
418 424anti-parallel
Strand 4
A
410 415anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 404first strand
Strand 2
A
438 448anti-parallel
Strand 3
A
462 472anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 435first strand
Strand 2
A
438 448anti-parallel
Strand 3
A
462 472anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il