Analysis of interatomic Contacts of Structural Units in PDB entry:
3D5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D5S entry

There are 4 chains in PDB entry 3D5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2PRO 298
C
 THR 11ARG 75
B
 GLY 2PRO 298
D
 THR 11ARG 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3D5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed 310
Helix 2
2
A
23 42Right-handed alpha
Helix 3
3
A
45 48Right-handed 310
Helix 4
4
A
49 69Right-handed alpha
Helix 5
5
A
86 100Right-handed alpha
Helix 6
6
A
101 103Right-handed 310
Helix 7
7
A
107 123Right-handed alpha
Helix 8
8
A
137 146Right-handed 310
Helix 9
9
A
149 170Right-handed alpha
Helix 10
10
A
171 173Right-handed 310
Helix 11
11
A
175 192Right-handed alpha
Helix 12
12
A
196 209Right-handed alpha
Helix 13
13
A
214 225Right-handed alpha
Helix 14
14
A
236 255Right-handed alpha
Helix 15
15
A
259 270Right-handed alpha
Helix 16
16
A
279 297Right-handed alpha
Helix 17
17
C
11 35Right-handed alpha
Helix 18
18
C
36 50Right-handed alpha
Helix 19
19
C
51 53Right-handed 310
Helix 20
20
C
54 72Right-handed alpha
Helix 21
21
B
7 15Right-handed 310
Helix 22
22
B
23 42Right-handed alpha
Helix 23
23
B
49 68Right-handed alpha
Helix 24
24
B
69 71Right-handed 310
Helix 25
25
B
86 100Right-handed alpha
Helix 26
26
B
101 103Right-handed 310
Helix 27
27
B
107 123Right-handed alpha
Helix 28
28
B
137 146Right-handed 310
Helix 29
29
B
149 170Right-handed alpha
Helix 30
30
B
175 192Right-handed alpha
Helix 31
31
B
196 210Right-handed alpha
Helix 32
32
B
214 225Right-handed alpha
Helix 33
33
B
226 229Right-handed 310
Helix 34
34
B
236 255Right-handed alpha
Helix 35
35
B
259 270Right-handed alpha
Helix 36
36
B
279 297Right-handed alpha
Helix 37
37
D
11 35Right-handed alpha
Helix 38
38
D
36 50Right-handed alpha
Helix 39
39
D
51 53Right-handed 310
Helix 40
40
D
54 72Right-handed alpha
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There are no sheets in PDB entry 3D5S
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il