Analysis of interatomic Contacts of Structural Units in PDB entry:
3D5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D5T entry

There are 4 chains in PDB entry 3D5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 325
B
 LYS 3LEU 325
C
 LYS 3LEU 325
D
 LYS 3LEU 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 3D5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
44 46Right-handed 310
Helix 3
3
A
47 60Right-handed alpha
Helix 4
4
A
74 80Right-handed alpha
Helix 5
5
A
98 121Right-handed alpha
Helix 6
6
A
133 144Right-handed alpha
Helix 7
7
A
149 151Right-handed 310
Helix 8
8
A
157 173Right-handed alpha
Helix 9
9
A
175 179Right-handed 310
Helix 10
10
A
205 211Right-handed alpha
Helix 11
11
A
213 219Right-handed alpha
Helix 12
12
A
219 226Right-handed alpha
Helix 13
13
A
226 236Right-handed alpha
Helix 14
14
A
239 257Right-handed alpha
Helix 15
15
A
271 275Right-handed 310
Helix 16
16
A
301 320Right-handed alpha
Helix 17
17
B
15 27Right-handed alpha
Helix 18
18
B
44 46Right-handed 310
Helix 19
19
B
47 60Right-handed alpha
Helix 20
20
B
74 80Right-handed alpha
Helix 21
21
B
98 121Right-handed alpha
Helix 22
22
B
133 144Right-handed alpha
Helix 23
23
B
149 151Right-handed 310
Helix 24
24
B
157 173Right-handed alpha
Helix 25
25
B
175 177Right-handed 310
Helix 26
26
B
206 211Right-handed alpha
Helix 27
27
B
212 219Right-handed alpha
Helix 28
28
B
219 226Right-handed alpha
Helix 29
29
B
226 236Right-handed alpha
Helix 30
30
B
239 257Right-handed alpha
Helix 31
31
B
271 275Right-handed 310
Helix 32
32
B
301 321Right-handed alpha
Helix 33
33
C
15 27Right-handed alpha
Helix 34
34
C
44 46Right-handed 310
Helix 35
35
C
47 60Right-handed alpha
Helix 36
36
C
74 79Right-handed alpha
Helix 37
37
C
99 101Right-handed alpha
Helix 38
38
C
102 121Right-handed alpha
Helix 39
39
C
133 144Right-handed alpha
Helix 40
40
C
149 151Right-handed 310
Helix 41
41
C
157 173Right-handed alpha
Helix 42
42
C
206 211Right-handed alpha
Helix 43
43
C
212 219Right-handed alpha
Helix 44
44
C
219 236Right-handed alpha
Helix 45
45
C
239 257Right-handed alpha
Helix 46
46
C
271 275Right-handed 310
Helix 47
47
C
301 321Right-handed alpha
Helix 48
48
D
15 28Right-handed alpha
Helix 49
49
D
44 46Right-handed 310
Helix 50
50
D
47 60Right-handed alpha
Helix 51
51
D
74 79Right-handed alpha
Helix 52
52
D
98 121Right-handed alpha
Helix 53
53
D
133 144Right-handed alpha
Helix 54
54
D
149 151Right-handed 310
Helix 55
55
D
157 173Right-handed alpha
Helix 56
56
D
175 177Right-handed 310
Helix 57
57
D
206 211Right-handed alpha
Helix 58
58
D
212 219Right-handed alpha
Helix 59
59
D
219 226Right-handed alpha
Helix 60
60
D
226 236Right-handed alpha
Helix 61
61
D
239 257Right-handed alpha
Helix 62
62
D
271 275Right-handed 310
Helix 63
63
D
301 321Right-handed alpha
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There are 15 sheets in PDB entry 3D5T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
37 42parallel
Strand 3
A
6 10parallel
Strand 4
A
84 87parallel
Strand 5
A
126 129parallel
Strand 6
A
153 155parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
193 195anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
280 288anti-parallel
Strand 3
A
291 294anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
37 42parallel
Strand 3
B
6 10parallel
Strand 4
B
84 87parallel
Strand 5
B
126 129parallel
Strand 6
B
153 155parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
200 201anti-parallel
Strand 3
B
204 205anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
193 195anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 268first strand
Strand 2
B
280 288anti-parallel
Strand 3
B
291 294anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 72first strand
Strand 2
C
37 42parallel
Strand 3
C
6 10parallel
Strand 4
C
84 87parallel
Strand 5
C
126 129parallel
Strand 6
C
153 155parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
200 201anti-parallel
Strand 3
C
204 205anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 185first strand
Strand 2
C
193 195anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 268first strand
Strand 2
C
280 288anti-parallel
Strand 3
C
291 294anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 72first strand
Strand 2
D
37 42parallel
Strand 3
D
6 10parallel
Strand 4
D
84 87parallel
Strand 5
D
126 129parallel
Strand 6
D
153 155parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
179 180first strand
Strand 2
D
200 201anti-parallel
Strand 3
D
204 205anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 185first strand
Strand 2
D
193 195anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
263 268first strand
Strand 2
D
280 288anti-parallel
Strand 3
D
291 294anti-parallel
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