Analysis of interatomic Contacts of Structural Units in PDB entry:
3D5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D5U entry

There is 1 chain in PDB entry 3D5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 23ARG 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3D5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 93Right-handed alpha
Helix 2
2
A
123 132Right-handed alpha
Helix 3
3
A
135 156Right-handed alpha
Helix 4
4
A
205 210Right-handed alpha
Helix 5
5
A
216 233Right-handed alpha
Helix 6
6
A
241 252Right-handed alpha
Helix 7
7
A
261 272Right-handed alpha
Helix 8
8
A
275 279Right-handed 310
Helix 9
9
A
281 287Right-handed alpha
Helix 10
10
A
288 294Right-handed alpha
Helix 11
11
A
301 306Right-handed 310
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There are 4 sheets in PDB entry 3D5U. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
51 58anti-parallel
Strand 4
A
44 48anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
38 40anti-parallel
Strand 3
A
51 58anti-parallel
Strand 4
A
64 71anti-parallel
Strand 5
A
111 116anti-parallel
Strand 6
A
102 107anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
185 186anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
176 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il