Analysis of interatomic Contacts of Structural Units in PDB entry:
3D68


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D68 entry

There are 3 chains in PDB entry 3D68 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 401
B
 ALA 1VAL 401
C
 ALA 1VAL 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 3D68. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
52 65Right-handed alpha
Helix 4
4
A
75 86Right-handed alpha
Helix 5
5
A
87 89Right-handed 310
Helix 6
6
A
95 100Right-handed 310
Helix 7
7
A
103 118Right-handed alpha
Helix 8
8
A
163 180Right-handed alpha
Helix 9
9
A
183 193Right-handed alpha
Helix 10
10
A
202 212Right-handed alpha
Helix 11
11
A
232 236Right-handed 310
Helix 12
12
A
264 278Right-handed alpha
Helix 13
13
A
307 326Right-handed alpha
Helix 14
14
A
336 340Right-handed alpha
Helix 15
15
A
346 354Right-handed alpha
Helix 16
16
A
370 374Right-handed 310
Helix 17
17
A
375 377Right-handed 310
Helix 18
18
A
378 401Right-handed alpha
Helix 19
19
B
13 27Right-handed alpha
Helix 20
20
B
36 40Right-handed 310
Helix 21
21
B
52 65Right-handed alpha
Helix 22
22
B
75 86Right-handed alpha
Helix 23
23
B
96 100Right-handed 310
Helix 24
24
B
103 118Right-handed alpha
Helix 25
25
B
163 180Right-handed alpha
Helix 26
26
B
183 192Right-handed alpha
Helix 27
27
B
202 212Right-handed alpha
Helix 28
28
B
232 236Right-handed 310
Helix 29
29
B
264 276Right-handed alpha
Helix 30
30
B
307 326Right-handed alpha
Helix 31
31
B
336 340Right-handed alpha
Helix 32
32
B
346 354Right-handed alpha
Helix 33
33
B
375 377Right-handed 310
Helix 34
34
B
378 400Right-handed alpha
Helix 35
35
C
13 27Right-handed alpha
Helix 36
36
C
36 40Right-handed 310
Helix 37
37
C
54 65Right-handed alpha
Helix 38
38
C
75 86Right-handed alpha
Helix 39
39
C
94 100Right-handed 310
Helix 40
40
C
103 118Right-handed alpha
Helix 41
41
C
163 180Right-handed alpha
Helix 42
42
C
183 193Right-handed alpha
Helix 43
43
C
202 212Right-handed alpha
Helix 44
44
C
232 236Right-handed 310
Helix 45
45
C
264 277Right-handed alpha
Helix 46
46
C
307 326Right-handed alpha
Helix 47
47
C
336 340Right-handed alpha
Helix 48
48
C
346 354Right-handed alpha
Helix 49
49
C
370 374Right-handed 310
Helix 50
50
C
375 401Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3D68. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
194 198anti-parallel
Strand 4
A
151 155parallel
Strand 5
A
281 288parallel
Strand 6
A
358 363parallel
Strand 7
A
293 296anti-parallel
Strand 8
A
332 335parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
4 9anti-parallel
Strand 4
B
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 129first strand
Strand 2
B
135 141anti-parallel
Strand 3
B
193 198anti-parallel
Strand 4
B
150 155parallel
Strand 5
B
281 289parallel
Strand 6
B
358 364parallel
Strand 7
B
293 296anti-parallel
Strand 8
B
332 335parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 33first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
4 9anti-parallel
Strand 4
C
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 129first strand
Strand 2
C
135 141anti-parallel
Strand 3
C
194 198anti-parallel
Strand 4
C
151 155parallel
Strand 5
C
281 288parallel
Strand 6
C
358 363parallel
Strand 7
C
293 296anti-parallel
Strand 8
C
332 335parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il