Analysis of interatomic Contacts of Structural Units in PDB entry:
3D69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D69 entry

There are 4 chains in PDB entry 3D69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 VAL 3THR 210
H
 GLY 1ASP 217
A
 VAL 3THR 210
B
 GLY 1ASP 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3D69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
79 83Right-handed 310
Helix 2
2
L
122 128Right-handed alpha
Helix 3
3
L
182 189Right-handed alpha
Helix 4
4
H
73 75Right-handed 310
Helix 5
5
H
83 87Right-handed 310
Helix 6
6
H
154 158Right-handed 310
Helix 7
7
A
122 128Right-handed alpha
Helix 8
8
A
182 189Right-handed alpha
Helix 9
9
B
28 32Right-handed 310
Helix 10
10
B
73 75Right-handed 310
Helix 11
11
B
83 87Right-handed 310
Helix 12
12
B
201 204Right-handed 310
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There are 21 sheets in PDB entry 3D69. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 92anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
44 48anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 92anti-parallel
Strand 4
L
95 98anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
22 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 116first strand
Strand 2
L
131 140anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
160 162anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
146 151first strand
Strand 2
L
192 197anti-parallel
Strand 3
L
202 207anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 68anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
71 72anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
100 111parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
122 124first strand
Strand 2
H
138 142anti-parallel
Strand 3
H
176 182anti-parallel
Strand 4
H
169 170anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 151first strand
Strand 2
H
198 200anti-parallel
Strand 3
H
205 207anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
102 106parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
44 48anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
102 106parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
96 97anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
65 66anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
176 181anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
146 151anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
204 207anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
67 68anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
71 72anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
88 95anti-parallel
Strand 5
B
100 103anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
88 95anti-parallel
Strand 5
B
108 109anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
137 145anti-parallel
Strand 3
B
176 183anti-parallel
Strand 4
B
163 165anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 200first strand
Strand 2
B
205 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il