Analysis of interatomic Contacts of Structural Units in PDB entry:
3D6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D6E entry

There are 2 chains in PDB entry 3D6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1ARG 201
B
 GLN 1ARG 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3D6E

There are 6 sheets in PDB entry 3D6E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
190 199anti-parallel
Strand 3
A
34 37anti-parallel
Strand 4
A
26 28anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
190 199anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
132 139anti-parallel
Strand 5
A
142 147anti-parallel
Strand 6
A
150 155anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
165 171anti-parallel
Strand 4
A
75 81anti-parallel
Strand 5
A
92 98anti-parallel
Strand 6
A
104 110anti-parallel
Strand 7
A
119 122anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
190 199anti-parallel
Strand 3
B
34 37anti-parallel
Strand 4
B
26 28anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
190 199anti-parallel
Strand 3
B
60 67anti-parallel
Strand 4
B
132 139anti-parallel
Strand 5
B
142 147anti-parallel
Strand 6
B
150 155anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
50 53anti-parallel
Strand 3
B
165 171anti-parallel
Strand 4
B
75 81anti-parallel
Strand 5
B
92 98anti-parallel
Strand 6
B
104 110anti-parallel
Strand 7
B
119 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il