Analysis of interatomic Contacts of Structural Units in PDB entry:
3D6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D6K entry

There are 4 chains in PDB entry 3D6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15VAL 419
B
 LEU 11VAL 419
C
 ASP 7VAL 419
D
 ALA 8VAL 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 3D6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
40 46Right-handed alpha
Helix 3
3
A
47 53Right-handed 310
Helix 4
4
A
75 87Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
99 115Right-handed alpha
Helix 7
7
A
122 126Right-handed 310
Helix 8
8
A
138 149Right-handed alpha
Helix 9
9
A
163 172Right-handed alpha
Helix 10
10
A
194 204Right-handed alpha
Helix 11
11
A
233 241Right-handed alpha
Helix 12
12
A
269 284Right-handed alpha
Helix 13
13
A
288 300Right-handed alpha
Helix 14
14
A
301 332Right-handed alpha
Helix 15
15
A
356 367Right-handed alpha
Helix 16
16
A
378 382Right-handed 310
Helix 17
17
A
397 418Right-handed alpha
Helix 18
18
B
14 28Right-handed alpha
Helix 19
19
B
40 46Right-handed alpha
Helix 20
20
B
47 53Right-handed 310
Helix 21
21
B
75 87Right-handed alpha
Helix 22
22
B
89 91Right-handed 310
Helix 23
23
B
99 115Right-handed alpha
Helix 24
24
B
122 126Right-handed 310
Helix 25
25
B
138 148Right-handed alpha
Helix 26
26
B
163 171Right-handed alpha
Helix 27
27
B
194 204Right-handed alpha
Helix 28
28
B
233 242Right-handed alpha
Helix 29
29
B
269 284Right-handed alpha
Helix 30
30
B
288 300Right-handed alpha
Helix 31
31
B
301 332Right-handed alpha
Helix 32
32
B
333 335Right-handed 310
Helix 33
33
B
356 367Right-handed alpha
Helix 34
34
B
378 382Right-handed 310
Helix 35
35
B
397 418Right-handed alpha
Helix 36
36
C
7 14Right-handed alpha
Helix 37
37
C
14 28Right-handed alpha
Helix 38
38
C
40 46Right-handed alpha
Helix 39
39
C
47 53Right-handed 310
Helix 40
40
C
75 87Right-handed alpha
Helix 41
41
C
89 91Right-handed 310
Helix 42
42
C
99 115Right-handed alpha
Helix 43
43
C
122 126Right-handed 310
Helix 44
44
C
138 148Right-handed alpha
Helix 45
45
C
163 171Right-handed alpha
Helix 46
46
C
194 204Right-handed alpha
Helix 47
47
C
233 241Right-handed alpha
Helix 48
48
C
269 284Right-handed alpha
Helix 49
49
C
288 300Right-handed alpha
Helix 50
50
C
301 332Right-handed alpha
Helix 51
51
C
333 335Right-handed 310
Helix 52
52
C
356 367Right-handed alpha
Helix 53
53
C
378 382Right-handed 310
Helix 54
54
C
397 417Right-handed alpha
Helix 55
55
D
10 28Right-handed alpha
Helix 56
56
D
40 46Right-handed alpha
Helix 57
57
D
47 53Right-handed 310
Helix 58
58
D
75 87Right-handed alpha
Helix 59
59
D
89 91Right-handed 310
Helix 60
60
D
99 115Right-handed alpha
Helix 61
61
D
122 126Right-handed 310
Helix 62
62
D
138 149Right-handed alpha
Helix 63
63
D
163 171Right-handed alpha
Helix 64
64
D
194 204Right-handed alpha
Helix 65
65
D
233 241Right-handed alpha
Helix 66
66
D
269 284Right-handed alpha
Helix 67
67
D
288 300Right-handed alpha
Helix 68
68
D
301 332Right-handed alpha
Helix 69
69
D
333 335Right-handed 310
Helix 70
70
D
356 367Right-handed alpha
Helix 71
71
D
378 382Right-handed 310
Helix 72
72
D
397 417Right-handed alpha
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There are 12 sheets in PDB entry 3D6K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
369 370parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
264 267anti-parallel
Strand 3
A
247 252anti-parallel
Strand 4
A
212 216parallel
Strand 5
A
176 181parallel
Strand 6
A
130 135parallel
Strand 7
A
151 158parallel
Strand 8
A
161 162anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
348 352anti-parallel
Strand 3
A
388 391anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
369 370parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
264 267anti-parallel
Strand 3
B
247 252anti-parallel
Strand 4
B
212 216parallel
Strand 5
B
176 181parallel
Strand 6
B
130 135parallel
Strand 7
B
151 158parallel
Strand 8
B
161 162anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
348 352anti-parallel
Strand 3
B
388 391anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
369 370parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
264 267anti-parallel
Strand 3
C
247 252anti-parallel
Strand 4
C
212 216parallel
Strand 5
C
176 181parallel
Strand 6
C
130 135parallel
Strand 7
C
151 158parallel
Strand 8
C
161 162anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
337 339first strand
Strand 2
C
348 352anti-parallel
Strand 3
C
388 391anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 33first strand
Strand 2
D
369 370parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 95first strand
Strand 2
D
264 267anti-parallel
Strand 3
D
247 252anti-parallel
Strand 4
D
212 216parallel
Strand 5
D
176 181parallel
Strand 6
D
130 135parallel
Strand 7
D
151 158parallel
Strand 8
D
161 162anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
338 339first strand
Strand 2
D
348 351anti-parallel
Strand 3
D
388 391anti-parallel
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