Analysis of interatomic Contacts of Structural Units in PDB entry:
3D7A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D7A entry

There are 2 chains in PDB entry 3D7A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2GLU 138
B
 PHE 5GLU 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3D7A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
57 67Right-handed alpha
Helix 3
3
A
69 80Right-handed alpha
Helix 4
4
A
92 97Right-handed alpha
Helix 5
5
A
119 128Right-handed alpha
Helix 6
6
B
19 31Right-handed alpha
Helix 7
7
B
57 67Right-handed alpha
Helix 8
8
B
69 80Right-handed alpha
Helix 9
9
B
91 97Right-handed alpha
Helix 10
10
B
119 128Right-handed alpha
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There are 4 sheets in PDB entry 3D7A. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
45 51anti-parallel
Strand 3
A
7 14anti-parallel
Strand 4
A
110 116anti-parallel
Strand 5
A
85 91anti-parallel
Strand 6
A
81 82anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
135 136anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
7 14anti-parallel
Strand 4
B
111 116anti-parallel
Strand 5
B
85 90anti-parallel
Strand 6
B
81 82anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
135 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il