Analysis of interatomic Contacts of Structural Units in PDB entry:
3D7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D7J entry

There are 6 chains in PDB entry 3D7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 132
B
 SER -1LEU 132
C
 GLY -2LEU 132
D
 SER -1LEU 132
E
 SER -1LEU 132
F
 GLY -2LEU 132
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 3D7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 26Right-handed 310
Helix 2
2
A
51 65Right-handed alpha
Helix 3
3
A
72 78Right-handed 310
Helix 4
4
A
83 101Right-handed alpha
Helix 5
5
A
105 111Right-handed 310
Helix 6
6
B
18 26Right-handed 310
Helix 7
7
B
51 65Right-handed alpha
Helix 8
8
B
72 78Right-handed 310
Helix 9
9
B
83 101Right-handed alpha
Helix 10
10
B
105 111Right-handed 310
Helix 11
11
C
18 26Right-handed 310
Helix 12
12
C
51 65Right-handed alpha
Helix 13
13
C
70 78Right-handed 310
Helix 14
14
C
83 101Right-handed alpha
Helix 15
15
C
105 111Right-handed 310
Helix 16
16
D
18 26Right-handed 310
Helix 17
17
D
51 65Right-handed alpha
Helix 18
18
D
72 78Right-handed 310
Helix 19
19
D
83 101Right-handed alpha
Helix 20
20
D
105 111Right-handed 310
Helix 21
21
E
18 26Right-handed 310
Helix 22
22
E
51 65Right-handed alpha
Helix 23
23
E
72 78Right-handed 310
Helix 24
24
E
83 102Right-handed alpha
Helix 25
25
E
105 111Right-handed 310
Helix 26
26
F
18 26Right-handed 310
Helix 27
27
F
51 65Right-handed alpha
Helix 28
28
F
72 78Right-handed 310
Helix 29
29
F
83 101Right-handed alpha
Helix 30
30
F
105 111Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3D7J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
0 14parallel
Strand 3
A
28 40anti-parallel
Strand 4
A
113 119anti-parallel
Strand 5
A
124 131anti-parallel
Strand 6
F
0 14anti-parallel
Strand 7
F
69 70parallel
Strand 8
F
0 14parallel
Strand 9
F
28 40anti-parallel
Strand 10
F
113 119anti-parallel
Strand 11
F
124 131anti-parallel
Strand 12
B
0 14anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
0 14parallel
Strand 3
B
28 40anti-parallel
Strand 4
B
113 119anti-parallel
Strand 5
B
124 131anti-parallel
Strand 6
A
0 14anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 70first strand
Strand 2
D
0 14parallel
Strand 3
C
124 131anti-parallel
Strand 4
C
113 119anti-parallel
Strand 5
C
28 40anti-parallel
Strand 6
C
0 14anti-parallel
Strand 7
E
124 131anti-parallel
Strand 8
E
113 119anti-parallel
Strand 9
E
28 40anti-parallel
Strand 10
E
1 14anti-parallel
Strand 11
E
69 70parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 70first strand
Strand 2
D
0 14parallel
Strand 3
D
28 40anti-parallel
Strand 4
D
113 119anti-parallel
Strand 5
D
124 131anti-parallel
Strand 6
E
1 14anti-parallel
Strand 7
E
69 70parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il