Analysis of interatomic Contacts of Structural Units in PDB entry:
3D7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D7M entry

There is 1 chain in PDB entry 3D7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 34ASN 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3D7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 58Right-handed alpha
Helix 2
2
A
62 68Right-handed alpha
Helix 3
3
A
69 92Right-handed alpha
Helix 4
4
A
99 111Right-handed alpha
Helix 5
5
A
121 133Right-handed alpha
Helix 6
6
A
133 142Right-handed alpha
Helix 7
7
A
143 146Right-handed 310
Helix 8
8
A
151 158Right-handed alpha
Helix 9
9
A
158 163Right-handed alpha
Helix 10
10
A
170 177Right-handed alpha
Helix 11
11
A
211 215Right-handed 310
Helix 12
12
A
228 230Right-handed 310
Helix 13
13
A
241 256Right-handed alpha
Helix 14
14
A
257 260Right-handed 310
Helix 15
15
A
270 278Right-handed alpha
Helix 16
16
A
279 281Right-handed 310
Helix 17
17
A
282 286Right-handed 310
Helix 18
18
A
295 309Right-handed alpha
Helix 19
19
A
313 317Right-handed 310
Helix 20
20
A
328 347Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3D7M.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 191first strand
Strand 2
A
194 201anti-parallel
Strand 3
A
35 40parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
319 323parallel
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