Analysis of interatomic Contacts of Structural Units in PDB entry:
3D7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D7W entry

There are 2 chains in PDB entry 3D7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1GLU 249
B
 ASP 249PRO 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3D7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
95 100Right-handed alpha
Helix 3
3
A
114 123Right-handed alpha
Helix 4
4
A
124 128Right-handed 310
Helix 5
5
A
131 144Right-handed alpha
Helix 6
6
A
148 163Right-handed alpha
Helix 7
7
A
163 169Right-handed alpha
Helix 8
8
A
169 183Right-handed alpha
Helix 9
9
A
189 209Right-handed alpha
Helix 10
10
A
233 237Right-handed alpha
Helix 11
11
B
263 267Right-handed 310
Helix 12
12
B
273 275Right-handed 310
Helix 13
13
B
292 296Right-handed 310
Helix 14
14
B
332 337Right-handed 310
Helix 15
15
B
374 378Right-handed 310
Helix 16
16
B
394 398Right-handed 310
Helix 17
17
B
416 418Right-handed 310
Helix 18
18
B
459 462Right-handed 310
Helix 19
19
B
501 505Right-handed 310
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There are 12 sheets in PDB entry 3D7W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
53 59parallel
Strand 3
A
65 71anti-parallel
Strand 4
A
77 82anti-parallel
Strand 5
A
85 88anti-parallel
Strand 6
A
105 108parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
37 40anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 222first strand
Strand 2
A
226 232anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
297 299anti-parallel
Strand 3
B
305 307anti-parallel
Strand 4
B
310 314anti-parallel
Strand 5
B
323 326anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
380 381anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 271first strand
Strand 2
B
282 285anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
346 348anti-parallel
Strand 3
B
353 356anti-parallel
Strand 4
B
367 369anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 431first strand
Strand 2
B
420 423anti-parallel
Strand 3
B
388 393anti-parallel
Strand 4
B
507 509anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 403first strand
Strand 2
B
406 410anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 440first strand
Strand 2
B
451 454anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 466first strand
Strand 2
B
472 474anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 483first strand
Strand 2
B
493 496anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il