Analysis of interatomic Contacts of Structural Units in PDB entry:
3D8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D8A entry

There are 16 chains in PDB entry 3D8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 60PRO 122
B
 ALA 60PRO 122
C
 ALA 60PRO 122
D
 ALA 60PRO 122
E
 ALA 60PRO 122
F
 ALA 60PRO 122
G
 ALA 60PRO 122
H
 ALA 60PRO 122
S
 ASP 710PHE 717
T
 VAL 711PHE 717
U
 VAL 711PHE 717
V
 VAL 711PHE 717
W
 VAL 711PHE 717
X
 VAL 711PHE 717
Y
 VAL 711PHE 717
Z
 VAL 711PHE 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3D8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 90Right-handed alpha
Helix 2
2
A
91 95Right-handed 310
Helix 3
3
A
97 100Right-handed 310
Helix 4
4
A
101 121Right-handed alpha
Helix 5
5
B
62 90Right-handed alpha
Helix 6
6
B
91 95Right-handed 310
Helix 7
7
B
97 100Right-handed 310
Helix 8
8
B
101 121Right-handed alpha
Helix 9
9
C
62 90Right-handed alpha
Helix 10
10
C
91 95Right-handed 310
Helix 11
11
C
97 100Right-handed 310
Helix 12
12
C
101 121Right-handed alpha
Helix 13
13
D
62 90Right-handed alpha
Helix 14
14
D
91 95Right-handed 310
Helix 15
15
D
97 100Right-handed 310
Helix 16
16
D
101 119Right-handed alpha
Helix 17
17
E
62 90Right-handed alpha
Helix 18
18
E
91 95Right-handed 310
Helix 19
19
E
97 100Right-handed 310
Helix 20
20
E
101 121Right-handed alpha
Helix 21
21
F
62 90Right-handed alpha
Helix 22
22
F
101 119Right-handed alpha
Helix 23
23
G
62 90Right-handed alpha
Helix 24
24
G
97 100Right-handed 310
Helix 25
25
G
101 121Right-handed alpha
Helix 26
26
H
62 90Right-handed alpha
Helix 27
27
H
97 100Right-handed 310
Helix 28
28
H
101 121Right-handed alpha
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There are no sheets in PDB entry 3D8A
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il